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Page 1
NCBI prokaryotic genome annotation pipeline.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. Tatusova T, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24. Nucleic Acids Res. 2016. PMID: 27342282 Free PMC article.
Special focus: bioinformatics.
Nawrocki EP, Burge SW. Nawrocki EP, et al. RNA Biol. 2013 Jul;10(7):1160. doi: 10.4161/rna.25606. RNA Biol. 2013. PMID: 23948768 Free PMC article.
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals.
Schnitzler CE, Chang ES, Waletich J, Quiroga-Artigas G, Wong WY, Nguyen AD, Barreira SN, Doonan LB, Gonzalez P, Koren S, Gahan JM, Sanders SM, Bradshaw B, DuBuc TQ, Febrimarsa, de Jong D, Nawrocki EP, Larson A, Klasfeld S, Gornik SG, Moreland RT, Wolfsberg TG, Phillippy AM, Mullikin JC, Simakov O, Cartwright P, Nicotra M, Frank U, Baxevanis AD. Schnitzler CE, et al. Among authors: nawrocki ep. Genome Res. 2024 Apr 25;34(3):498-513. doi: 10.1101/gr.278382.123. Genome Res. 2024. PMID: 38508693 Free PMC article.
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: nawrocki ep. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
Group I introns are widespread in archaea.
Nawrocki EP, Jones TA, Eddy SR. Nawrocki EP, et al. Nucleic Acids Res. 2018 Sep 6;46(15):7970-7976. doi: 10.1093/nar/gky414. Nucleic Acids Res. 2018. PMID: 29788499 Free PMC article.
Non-Coding RNA Analysis Using the Rfam Database.
Kalvari I, Nawrocki EP, Argasinska J, Quinones-Olvera N, Finn RD, Bateman A, Petrov AI. Kalvari I, et al. Among authors: nawrocki ep. Curr Protoc Bioinformatics. 2018 Jun;62(1):e51. doi: 10.1002/cpbi.51. Epub 2018 Jun 5. Curr Protoc Bioinformatics. 2018. PMID: 29927072 Free PMC article.
Rfam 15: RNA families database in 2025.
Ontiveros-Palacios N, Cooke E, Nawrocki EP, Triebel S, Marz M, Rivas E, Griffiths-Jones S, Petrov AI, Bateman A, Sweeney B. Ontiveros-Palacios N, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2025 Jan 6;53(D1):D258-D267. doi: 10.1093/nar/gkae1023. Nucleic Acids Res. 2025. PMID: 39526405 Free PMC article.
Influenza sequence validation and annotation using VADR.
Calhoun VC, Hatcher EL, Yankie L, Nawrocki EP. Calhoun VC, et al. Among authors: nawrocki ep. Database (Oxford). 2024 Sep 19;2024:baae091. doi: 10.1093/database/baae091. Database (Oxford). 2024. PMID: 39297389 Free PMC article.
59 results