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91 results

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Page 1
Improving Hi-C contact matrices using genome graphs.
Shen Y, Yu L, Qiu Y, Zhang T, Kingsford C. Shen Y, et al. Among authors: kingsford c. bioRxiv [Preprint]. 2023 Nov 10:2023.11.08.566275. doi: 10.1101/2023.11.08.566275. bioRxiv. 2023. PMID: 37986943 Free PMC article. Preprint.
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP. Jain S, et al. Nat Cell Biol. 2023 Aug;25(8):1089-1100. doi: 10.1038/s41556-023-01194-w. Epub 2023 Jul 19. Nat Cell Biol. 2023. PMID: 37468756 Free PMC article. Review.
What are decision trees?
Kingsford C, Salzberg SL. Kingsford C, et al. Nat Biotechnol. 2008 Sep;26(9):1011-3. doi: 10.1038/nbt0908-1011. Nat Biotechnol. 2008. PMID: 18779814 Free PMC article. Review.
Context-aware seeds for read mapping.
Xin H, Shao M, Kingsford C. Xin H, et al. Among authors: kingsford c. Algorithms Mol Biol. 2020 May 23;15:10. doi: 10.1186/s13015-020-00172-3. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 32489399 Free PMC article.
Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).
Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, Naba A, Nakayasu ES, Qian WJ, Radtke A, Robson P, Stockwell BR, Van de Plas R, Vlachos IS, Zhou M; HuBMAP Consortium; Börner K, Snyder MP. Jain S, et al. Nat Cell Biol. 2024 May;26(5):839. doi: 10.1038/s41556-024-01384-0. Nat Cell Biol. 2024. PMID: 38429479 No abstract available.
Creating and Using Minimizer Sketches in Computational Genomics.
Zheng H, Marçais G, Kingsford C. Zheng H, et al. Among authors: kingsford c. J Comput Biol. 2023 Dec;30(12):1251-1276. doi: 10.1089/cmb.2023.0094. Epub 2023 Aug 30. J Comput Biol. 2023. PMID: 37646787 Free PMC article. Review.
Sequence-specific minimizers via polar sets.
Zheng H, Kingsford C, Marçais G. Zheng H, et al. Among authors: kingsford c. Bioinformatics. 2021 Jul 12;37(Suppl_1):i187-i195. doi: 10.1093/bioinformatics/btab313. Bioinformatics. 2021. PMID: 34252928 Free PMC article.
Improved design and analysis of practical minimizers.
Zheng H, Kingsford C, Marçais G. Zheng H, et al. Among authors: kingsford c. Bioinformatics. 2020 Jul 1;36(Suppl_1):i119-i127. doi: 10.1093/bioinformatics/btaa472. Bioinformatics. 2020. PMID: 32657376 Free PMC article.
Exact transcript quantification over splice graphs.
Ma C, Zheng H, Kingsford C. Ma C, et al. Among authors: kingsford c. Algorithms Mol Biol. 2021 May 10;16(1):5. doi: 10.1186/s13015-021-00184-7. Algorithms Mol Biol. 2021. PMID: 33971903 Free PMC article.
91 results