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2011 1
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Page 1
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.
Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium. Vasaikar S, et al. Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25. Cell. 2019. PMID: 31031003 Free PMC article.
Proteogenomics connects somatic mutations to signalling in breast cancer.
Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Fenyö D, Ellis MJ, Carr SA; NCI CPTAC. Mertins P, et al. Nature. 2016 Jun 2;534(7605):55-62. doi: 10.1038/nature18003. Epub 2016 May 25. Nature. 2016. PMID: 27251275 Free PMC article.
Proteogenomic characterization of human colon and rectal cancer.
Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, Rodriguez H, Townsend RR, Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC; NCI CPTAC. Zhang B, et al. Nature. 2014 Sep 18;513(7518):382-7. doi: 10.1038/nature13438. Epub 2014 Jul 20. Nature. 2014. PMID: 25043054 Free PMC article.
Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.
Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ, Levine DA, Townsend R, Erdmann-Gilmore P, Snider JE, Davies SR, Ruggles KV, Fenyo D, Kitchens RT, Li S, Olvera N, Dao F, Rodriguez H, Chan DW, Liebler D, White F, Rodland KD, Mills GB, Smith RD, Paulovich AG, Ellis M, Carr SA. Mertins P, et al. Mol Cell Proteomics. 2014 Jul;13(7):1690-704. doi: 10.1074/mcp.M113.036392. Epub 2014 Apr 9. Mol Cell Proteomics. 2014. PMID: 24719451 Free PMC article.
Methods, Tools and Current Perspectives in Proteogenomics.
Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR. Ruggles KV, et al. Mol Cell Proteomics. 2017 Jun;16(6):959-981. doi: 10.1074/mcp.MR117.000024. Epub 2017 Apr 29. Mol Cell Proteomics. 2017. PMID: 28456751 Free PMC article. Review.
The SEQUEST family tree.
Tabb DL. Tabb DL. J Am Soc Mass Spectrom. 2015 Nov;26(11):1814-9. doi: 10.1007/s13361-015-1201-3. Epub 2015 Jun 30. J Am Soc Mass Spectrom. 2015. PMID: 26122518 Free PMC article.
System level dynamics of post-translational modifications.
Gajadhar AS, White FM. Gajadhar AS, et al. Curr Opin Biotechnol. 2014 Aug;28:83-7. doi: 10.1016/j.copbio.2013.12.009. Epub 2014 Jan 15. Curr Opin Biotechnol. 2014. PMID: 24441143 Free PMC article. Review.
Quality assessment for clinical proteomics.
Tabb DL. Tabb DL. Clin Biochem. 2013 Apr;46(6):411-20. doi: 10.1016/j.clinbiochem.2012.12.003. Epub 2012 Dec 12. Clin Biochem. 2013. PMID: 23246537 Free PMC article. Review.
Targeted quantitation of proteins by mass spectrometry.
Liebler DC, Zimmerman LJ. Liebler DC, et al. Biochemistry. 2013 Jun 4;52(22):3797-806. doi: 10.1021/bi400110b. Epub 2013 Mar 27. Biochemistry. 2013. PMID: 23517332 Free PMC article. Review.
74 results