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iPTMnet: Integrative Bioinformatics for Studying PTM Networks.
Ross KE, Huang H, Ren J, Arighi CN, Li G, Tudor CO, Lv M, Lee JY, Chen SC, Vijay-Shanker K, Wu CH. Ross KE, et al. Methods Mol Biol. 2017;1558:333-353. doi: 10.1007/978-1-4939-6783-4_16. Methods Mol Biol. 2017. PMID: 28150246 Free PMC article.
The Gene Ontology resource: enriching a GOld mine.
Gene Ontology Consortium. Gene Ontology Consortium. Nucleic Acids Res. 2021 Jan 8;49(D1):D325-D334. doi: 10.1093/nar/gkaa1113. Nucleic Acids Res. 2021. PMID: 33290552 Free PMC article.
DEXTER: Disease-Expression Relation Extraction from Text.
Gupta S, Dingerdissen H, Ross KE, Hu Y, Wu CH, Mazumder R, Vijay-Shanker K. Gupta S, et al. Database (Oxford). 2018 Jan 1;2018:bay045. doi: 10.1093/database/bay045. Database (Oxford). 2018. PMID: 29860481 Free PMC article.
Minimizing proteome redundancy in the UniProt Knowledgebase.
Bursteinas B, Britto R, Bely B, Auchincloss A, Rivoire C, Redaschi N, O'Donovan C, Martin MJ. Bursteinas B, et al. Database (Oxford). 2016 Dec 26;2016:baw139. doi: 10.1093/database/baw139. Print 2016. Database (Oxford). 2016. PMID: 28025334 Free PMC article.
UniProt: the universal protein knowledgebase.
The UniProt Consortium. The UniProt Consortium. Nucleic Acids Res. 2017 Jan 4;45(D1):D158-D169. doi: 10.1093/nar/gkw1099. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899622 Free PMC article.
Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.
Huang LC, Ross KE, Baffi TR, Drabkin H, Kochut KJ, Ruan Z, D'Eustachio P, McSkimming D, Arighi C, Chen C, Natale DA, Smith C, Gaudet P, Newton AC, Wu C, Kannan N. Huang LC, et al. Sci Rep. 2018 Apr 25;8(1):6518. doi: 10.1038/s41598-018-24457-1. Sci Rep. 2018. PMID: 29695735 Free PMC article.
21 results