R35 GM139580/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2022	3
2023	6
2024	7

1

Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects.

Qi G, Strober BJ, Popp JM, Keener R, Ji H, Battle A. Qi G, et al. Nat Commun. 2023 Oct 9;14(1):6317. doi: 10.1038/s41467-023-42016-9. Nat Commun. 2023. PMID: 37813843 Free PMC article.

2

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex.

Huuki-Myers LA, Spangler A, Eagles NJ, Montgomery KD, Kwon SH, Guo B, Grant-Peters M, Divecha HR, Tippani M, Sriworarat C, Nguyen AB, Ravichandran P, Tran MN, Seyedian A; PsychENCODE Consortium†; Hyde TM, Kleinman JE, Battle A, Page SC, Ryten M, Hicks SC, Martinowich K, Collado-Torres L, Maynard KR; PsychENCODE Consortium. Huuki-Myers LA, et al. Science. 2024 May 24;384(6698):eadh1938. doi: 10.1126/science.adh1938. Epub 2024 May 24. Science. 2024. PMID: 38781370 Free PMC article.

3

Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease.

Weinstock JS, Arce MM, Freimer JW, Ota M, Marson A, Battle A, Pritchard JK. Weinstock JS, et al. bioRxiv [Preprint]. 2023 Oct 24:2023.09.17.557749. doi: 10.1101/2023.09.17.557749. bioRxiv. 2023. PMID: 37745614 Free PMC article. Preprint.

4

Jasmine and Iris: population-scale structural variant comparison and analysis.

Kirsche M, Prabhu G, Sherman R, Ni B, Battle A, Aganezov S, Schatz MC. Kirsche M, et al. Nat Methods. 2023 Mar;20(3):408-417. doi: 10.1038/s41592-022-01753-3. Epub 2023 Jan 19. Nat Methods. 2023. PMID: 36658279 Free PMC article.

5

Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease.

Jensen TD, Ni B, Reuter CM, Gorzynski JE, Fazal S, Bonner D, Ungar RA, Goddard PC, Raja A, Ashley EA, Bernstein JA, Zuchner S; Undiagnosed Diseases Network; Greicius MD, Montgomery SB, Schatz MC, Wheeler MT, Battle A. Jensen TD, et al. medRxiv [Preprint]. 2024 Mar 26:2024.03.22.24304565. doi: 10.1101/2024.03.22.24304565. medRxiv. 2024. PMID: 38585781 Free PMC article. Preprint.

6

Sources of gene expression variation in a globally diverse human cohort.

Taylor DJ, Chhetri SB, Tassia MG, Biddanda A, Battle A, McCoy RC. Taylor DJ, et al. bioRxiv [Preprint]. 2023 Nov 8:2023.11.04.565639. doi: 10.1101/2023.11.04.565639. bioRxiv. 2023. Update in: Nature. 2024 Aug;632(8023):122-130. doi: 10.1038/s41586-024-07708-2. PMID: 37965206 Free PMC article. Updated. Preprint.

7

Redefining tissue specificity of genetic regulation of gene expression in the presence of allelic heterogeneity.

Arvanitis M, Tayeb K, Strober BJ, Battle A. Arvanitis M, et al. Am J Hum Genet. 2022 Feb 3;109(2):223-239. doi: 10.1016/j.ajhg.2022.01.002. Epub 2022 Jan 31. Am J Hum Genet. 2022. PMID: 35085493 Free PMC article.

8

A systematic comparison of computational methods for expression forecasting.

Kernfeld E, Yang Y, Weinstock J, Battle A, Cahan P. Kernfeld E, et al. bioRxiv [Preprint]. 2024 Oct 1:2023.07.28.551039. doi: 10.1101/2023.07.28.551039. bioRxiv. 2024. PMID: 37577640 Free PMC article. Preprint.

9

Inference after latent variable estimation for single-cell RNA sequencing data.

Neufeld A, Gao LL, Popp J, Battle A, Witten D. Neufeld A, et al. Biostatistics. 2023 Dec 15;25(1):270-287. doi: 10.1093/biostatistics/kxac047. Biostatistics. 2023. PMID: 36511385

10

Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types.

Rhodes K, Barr KA, Popp JM, Strober BJ, Battle A, Gilad Y. Rhodes K, et al. Elife. 2022 Feb 10;11:e71361. doi: 10.7554/eLife.71361. Elife. 2022. PMID: 35142607 Free PMC article.

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