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Functional genomics of OCTN2 variants informs protein-specific variant effect predictor for Carnitine Transporter Deficiency.
Koleske ML, McInnes G, Brown JEH, Thomas N, Hutchinson K, Chin MY, Koehl A, Arkin MR, Schlessinger A, Gallagher RC, Song YS, Altman RB, Giacomini KM. Koleske ML, et al. Proc Natl Acad Sci U S A. 2022 Nov 16;119(46):e2210247119. doi: 10.1073/pnas.2210247119. Epub 2022 Nov 7. Proc Natl Acad Sci U S A. 2022. PMID: 36343260 Free PMC article.
Tracing cancer evolution and heterogeneity using Hi-C.
Erdmann-Pham DD, Batra SS, Turkalo TK, Durbin J, Blanchette M, Yeh I, Shain H, Bastian BC, Song YS, Rokhsar DS, Hockemeyer D. Erdmann-Pham DD, et al. Nat Commun. 2023 Nov 6;14(1):7111. doi: 10.1038/s41467-023-42651-2. Nat Commun. 2023. PMID: 37932252 Free PMC article.
SCITO-seq: single-cell combinatorial indexed cytometry sequencing.
Hwang B, Lee DS, Tamaki W, Sun Y, Ogorodnikov A, Hartoularos GC, Winters A, Yeung BZ, Nazor KL, Song YS, Chow ED, Spitzer MH, Ye CJ. Hwang B, et al. Nat Methods. 2021 Aug;18(8):903-911. doi: 10.1038/s41592-021-01222-3. Epub 2021 Aug 5. Nat Methods. 2021. PMID: 34354295 Free PMC article.
Predicting the effect of CRISPR-Cas9-based epigenome editing.
Batra SS, Cabrera A, Spence JP, Goell J, Anand SS, Hilton IB, Song YS. Batra SS, et al. bioRxiv [Preprint]. 2024 Oct 16:2023.10.03.560674. doi: 10.1101/2023.10.03.560674. bioRxiv. 2024. PMID: 37873127 Free PMC article. Preprint.
Learning antibody sequence constraints from allelic inclusion.
Jagota M, Hsu C, Mazumder T, Sung K, DeWitt WS, Listgarten J, Matsen FA 4th, Ye CJ, Song YS. Jagota M, et al. bioRxiv [Preprint]. 2024 Oct 25:2024.10.22.619760. doi: 10.1101/2024.10.22.619760. bioRxiv. 2024. PMID: 39484623 Free PMC article. Preprint.
32 results