R35 GM126985/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2019	8
2020	8
2021	7
2022	13
2023	8
2024	8

1

Deep transfer learning of cancer drug responses by integrating bulk and single-cell RNA-seq data.

Chen J, Wang X, Ma A, Wang QE, Liu B, Li L, Xu D, Ma Q. Chen J, et al. Nat Commun. 2022 Oct 30;13(1):6494. doi: 10.1038/s41467-022-34277-7. Nat Commun. 2022. PMID: 36310235 Free PMC article.

2

Computational methods for protein localization prediction.

Jiang Y, Wang D, Wang W, Xu D. Jiang Y, et al. Comput Struct Biotechnol J. 2021 Oct 19;19:5834-5844. doi: 10.1016/j.csbj.2021.10.023. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34765098 Free PMC article. Review.

3

Deep learning shapes single-cell data analysis.

Ma Q, Xu D. Ma Q, et al. Nat Rev Mol Cell Biol. 2022 May;23(5):303-304. doi: 10.1038/s41580-022-00466-x. Nat Rev Mol Cell Biol. 2022. PMID: 35197610 Free PMC article.

4

Single-cell biological network inference using a heterogeneous graph transformer.

Ma A, Wang X, Li J, Wang C, Xiao T, Liu Y, Cheng H, Wang J, Li Y, Chang Y, Li J, Wang D, Jiang Y, Su L, Xin G, Gu S, Li Z, Liu B, Xu D, Ma Q. Ma A, et al. Nat Commun. 2023 Feb 21;14(1):964. doi: 10.1038/s41467-023-36559-0. Nat Commun. 2023. PMID: 36810839 Free PMC article.

5

Dimension-agnostic and granularity-based spatially variable gene identification.

Wang J, Li J, Kramer ST, Su L, Chang Y, Xu C, Ma Q, Xu D. Wang J, et al. bioRxiv [Preprint]. 2023 Mar 24:2023.03.21.533713. doi: 10.1101/2023.03.21.533713. bioRxiv. 2023. Update in: Nat Commun. 2023 Nov 14;14(1):7367. doi: 10.1038/s41467-023-43256-5 PMID: 36993544 Free PMC article. Updated. Preprint.

6

Dimension-agnostic and granularity-based spatially variable gene identification using BSP.

Wang J, Li J, Kramer ST, Su L, Chang Y, Xu C, Eadon MT, Kiryluk K, Ma Q, Xu D. Wang J, et al. Nat Commun. 2023 Nov 14;14(1):7367. doi: 10.1038/s41467-023-43256-5. Nat Commun. 2023. PMID: 37963892 Free PMC article.

7

Single-Cell Techniques and Deep Learning in Predicting Drug Response.

Wu Z, Lawrence PJ, Ma A, Zhu J, Xu D, Ma Q. Wu Z, et al. Trends Pharmacol Sci. 2020 Dec;41(12):1050-1065. doi: 10.1016/j.tips.2020.10.004. Epub 2020 Nov 2. Trends Pharmacol Sci. 2020. PMID: 33153777 Free PMC article. Review.

8

Prediction of Protein Ion-Ligand Binding Sites with ELECTRA.

Essien C, Jiang L, Wang D, Xu D. Essien C, et al. Molecules. 2023 Sep 25;28(19):6793. doi: 10.3390/molecules28196793. Molecules. 2023. PMID: 37836636 Free PMC article.

9

Diffusion models in bioinformatics and computational biology.

Guo Z, Liu J, Wang Y, Chen M, Wang D, Xu D, Cheng J. Guo Z, et al. Nat Rev Bioeng. 2024 Feb;2(2):136-154. doi: 10.1038/s44222-023-00114-9. Epub 2023 Oct 27. Nat Rev Bioeng. 2024. PMID: 38576453 Free PMC article.

10

Dimension-agnostic and granularity-based spatially variable gene identification.

Wang J, Li J, Kramer S, Su L, Chang Y, Xu C, Ma Q, Xu D. Wang J, et al. Res Sq [Preprint]. 2023 Mar 22:rs.3.rs-2687726. doi: 10.21203/rs.3.rs-2687726/v1. Res Sq. 2023. Update in: Nat Commun. 2023 Nov 14;14(1):7367. doi: 10.1038/s41467-023-43256-5 PMID: 36993309 Free PMC article. Updated. Preprint.

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