R01 GM078031/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2008	2
2009	1
2010	2
2011	1
2012	6
2013	4
2014	5
2015	6
2016	5
2017	5
2018	4
2019	5
2020	2
2022	3
2023	1
2024	0

1

Gainza P, Nisonoff HM, Donald BR. Gainza P, et al. Curr Opin Struct Biol. 2016 Aug;39:16-26. doi: 10.1016/j.sbi.2016.03.006. Epub 2016 Apr 14. Curr Opin Struct Biol. 2016. PMID: 27086078 Free PMC article. Review.

2

Protein Design by Provable Algorithms.

Hallen MA, Donald BR. Hallen MA, et al. Commun ACM. 2019 Oct;62(10):76-84. doi: 10.1145/3338124. Commun ACM. 2019. PMID: 31607753 Free PMC article.

3

Parallel Computational Protein Design.

Zhou Y, Donald BR, Zeng J. Zhou Y, et al. Methods Mol Biol. 2017;1529:265-277. doi: 10.1007/978-1-4939-6637-0_13. Methods Mol Biol. 2017. PMID: 27914056 Free PMC article.

4

RESISTOR: A New OSPREY Module to Predict Resistance Mutations.

Guerin N, Kaserer T, Donald BR. Guerin N, et al. J Comput Biol. 2022 Dec;29(12):1346-1352. doi: 10.1089/cmb.2022.0254. Epub 2022 Sep 13. J Comput Biol. 2022. PMID: 36099194 Free PMC article.

5

Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.

Holt GT, Gorman J, Wang S, Lowegard AU, Zhang B, Liu T, Lin BC, Louder MK, Frenkel MS, McKee K, O'Dell S, Rawi R, Shen CH, Doria-Rose NA, Kwong PD, Donald BR. Holt GT, et al. Cell Rep. 2023 Jul 25;42(7):112711. doi: 10.1016/j.celrep.2023.112711. Epub 2023 Jul 11. Cell Rep. 2023. PMID: 37436900 Free PMC article.

6

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.

Wang S, Reeve SM, Holt GT, Ojewole AA, Frenkel MS, Gainza P, Keshipeddy S, Fowler VG, Wright DL, Donald BR. Wang S, et al. PLoS Comput Biol. 2022 Feb 10;18(2):e1009855. doi: 10.1371/journal.pcbi.1009855. eCollection 2022 Feb. PLoS Comput Biol. 2022. PMID: 35143481 Free PMC article.

7

Continuous Interdomain Orientation Distributions Reveal Components of Binding Thermodynamics.

Qi Y, Martin JW, Barb AW, Thélot F, Yan AK, Donald BR, Oas TG. Qi Y, et al. J Mol Biol. 2018 Sep 14;430(18 Pt B):3412-3426. doi: 10.1016/j.jmb.2018.06.022. Epub 2018 Jun 18. J Mol Biol. 2018. PMID: 29924964 Free PMC article.

8

Protein design using continuous rotamers.

Gainza P, Roberts KE, Donald BR. Gainza P, et al. PLoS Comput Biol. 2012 Jan;8(1):e1002335. doi: 10.1371/journal.pcbi.1002335. Epub 2012 Jan 12. PLoS Comput Biol. 2012. PMID: 22279426 Free PMC article.

9

Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures.

Guerin N, Feichtner A, Stefan E, Kaserer T, Donald BR. Guerin N, et al. Cell Syst. 2022 Oct 19;13(10):830-843.e3. doi: 10.1016/j.cels.2022.09.003. Cell Syst. 2022. PMID: 36265469 Free PMC article.

10

Fast search algorithms for computational protein design.

Traoré S, Roberts KE, Allouche D, Donald BR, André I, Schiex T, Barbe S. Traoré S, et al. J Comput Chem. 2016 May 5;37(12):1048-58. doi: 10.1002/jcc.24290. Epub 2016 Feb 2. J Comput Chem. 2016. PMID: 26833706 Free PMC article.

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