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Page 1
The Comparative Genome Dashboard.
Paley S, Caspi R, O'Maille P, Karp PD. Paley S, et al. Front Microbiol. 2024 Jul 31;15:1447632. doi: 10.3389/fmicb.2024.1447632. eCollection 2024. Front Microbiol. 2024. PMID: 39144229 Free PMC article.
The BioCyc collection of microbial genomes and metabolic pathways.
Karp PD, Billington R, Caspi R, Fulcher CA, Latendresse M, Kothari A, Keseler IM, Krummenacker M, Midford PE, Ong Q, Ong WK, Paley SM, Subhraveti P. Karp PD, et al. Brief Bioinform. 2019 Jul 19;20(4):1085-1093. doi: 10.1093/bib/bbx085. Brief Bioinform. 2019. PMID: 29447345 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes.
Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD. Caspi R, et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D633-D639. doi: 10.1093/nar/gkx935. Nucleic Acids Res. 2018. PMID: 29059334 Free PMC article.
Pathway collages: personalized multi-pathway diagrams.
Paley S, O'Maille PE, Weaver D, Karp PD. Paley S, et al. BMC Bioinformatics. 2016 Dec 13;17(1):529. doi: 10.1186/s12859-016-1382-1. BMC Bioinformatics. 2016. PMID: 27964719 Free PMC article.
A Comparison of Microbial Genome Web Portals.
Karp PD, Ivanova N, Krummenacker M, Kyrpides N, Latendresse M, Midford P, Ong WK, Paley S, Seshadri R. Karp PD, et al. Front Microbiol. 2019 Feb 22;10:208. doi: 10.3389/fmicb.2019.00208. eCollection 2019. Front Microbiol. 2019. PMID: 30853946 Free PMC article. Review.
Annotation-based inference of transporter function.
Lee TJ, Paulsen I, Karp P. Lee TJ, et al. Bioinformatics. 2008 Jul 1;24(13):i259-67. doi: 10.1093/bioinformatics/btn180. Bioinformatics. 2008. PMID: 18586723 Free PMC article.
37 results