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FiberNeat: Unsupervised White Matter Tract Filtering.
Chandio BQ, Chattopadhyay T, Owens-Walton C, Reina JEV, Nabulsi L, Thomopoulos SI, Garyfallidis E, Thompson PM. Chandio BQ, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2022 Jul;2022:5055-5061. doi: 10.1109/EMBC48229.2022.9870877. Annu Int Conf IEEE Eng Med Biol Soc. 2022. PMID: 36085780
What's new and what's next in diffusion MRI preprocessing.
Tax CMW, Bastiani M, Veraart J, Garyfallidis E, Okan Irfanoglu M. Tax CMW, et al. Neuroimage. 2022 Apr 1;249:118830. doi: 10.1016/j.neuroimage.2021.118830. Epub 2021 Dec 26. Neuroimage. 2022. PMID: 34965454 Free PMC article. Review.
An analysis-ready and quality controlled resource for pediatric brain white-matter research.
Richie-Halford A, Cieslak M, Ai L, Caffarra S, Covitz S, Franco AR, Karipidis II, Kruper J, Milham M, Avelar-Pereira B, Roy E, Sydnor VJ, Yeatman JD; Fibr Community Science Consortium; Satterthwaite TD, Rokem A. Richie-Halford A, et al. Sci Data. 2022 Oct 12;9(1):616. doi: 10.1038/s41597-022-01695-7. Sci Data. 2022. PMID: 36224186 Free PMC article.
brainlife.io: a decentralized and open-source cloud platform to support neuroscience research.
Hayashi S, Caron BA, Heinsfeld AS, Vinci-Booher S, McPherson B, Bullock DN, Bertò G, Niso G, Hanekamp S, Levitas D, Ray K, MacKenzie A, Avesani P, Kitchell L, Leong JK, Nascimento-Silva F, Koudoro S, Willis H, Jolly JK, Pisner D, Zuidema TR, Kurzawski JW, Mikellidou K, Bussalb A, Chaumon M, George N, Rorden C, Victory C, Bhatia D, Aydogan DB, Yeh FF, Delogu F, Guaje J, Veraart J, Fischer J, Faskowitz J, Fabrega R, Hunt D, McKee S, Brown ST, Heyman S, Iacovella V, Mejia AF, Marinazzo D, Craddock RC, Olivetti E, Hanson JL, Garyfallidis E, Stanzione D, Carson J, Henschel R, Hancock DY, Stewart CA, Schnyer D, Eke DO, Poldrack RA, Bollmann S, Stewart A, Bridge H, Sani I, Freiwald WA, Puce A, Port NL, Pestilli F. Hayashi S, et al. Nat Methods. 2024 May;21(5):809-813. doi: 10.1038/s41592-024-02237-2. Epub 2024 Apr 11. Nat Methods. 2024. PMID: 38605111 Free PMC article.
Ten simple rules for scientific code review.
Rokem A. Rokem A. PLoS Comput Biol. 2024 Sep 5;20(9):e1012375. doi: 10.1371/journal.pcbi.1012375. eCollection 2024 Sep. PLoS Comput Biol. 2024. PMID: 39236077 Free PMC article.
Learning white matter subject-specific segmentation from structural MRI.
Yang Q, Hansen CB, Cai LY, Rheault F, Lee HH, Bao S, Chandio BQ, Williams O, Resnick SM, Garyfallidis E, Anderson AW, Descoteaux M, Schilling KG, Landman BA. Yang Q, et al. Med Phys. 2022 Apr;49(4):2502-2513. doi: 10.1002/mp.15495. Epub 2022 Feb 7. Med Phys. 2022. PMID: 35090192 Free PMC article.
Differences in educational opportunity predict white matter development.
Roy E, Van Rinsveld A, Nedelec P, Richie-Halford A, Rauschecker AM, Sugrue LP, Rokem A, McCandliss BD, Yeatman JD. Roy E, et al. Dev Cogn Neurosci. 2024 Jun;67:101386. doi: 10.1016/j.dcn.2024.101386. Epub 2024 Apr 22. Dev Cogn Neurosci. 2024. PMID: 38676989 Free PMC article.
26 results