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Page 1
Engineering the future of 3D pathology.
Liu JT, Chow SS, Colling R, Downes MR, Farré X, Humphrey P, Janowczyk A, Mirtti T, Verrill C, Zlobec I, True LD. Liu JT, et al. J Pathol Clin Res. 2024 Jan;10(1):e347. doi: 10.1002/cjp2.347. Epub 2023 Nov 2. J Pathol Clin Res. 2024. PMID: 37919231 Free PMC article.
Kidney Biopsy Features Most Predictive of Clinical Outcomes in the Spectrum of Minimal Change Disease and Focal Segmental Glomerulosclerosis.
Zee J, Liu Q, Smith AR, Hodgin JB, Rosenberg A, Gillespie BW, Holzman LB, Barisoni L, Mariani LH; Nephrotic Syndrome Study Network (NEPTUNE); NEPTUNE Members. Zee J, et al. J Am Soc Nephrol. 2022 Jul;33(7):1411-1426. doi: 10.1681/ASN.2021101396. Epub 2022 May 17. J Am Soc Nephrol. 2022. PMID: 35581011 Free PMC article.
Deep learning segmentation of glomeruli on kidney donor frozen sections.
Li X, Davis RC, Xu Y, Wang Z, Souma N, Sotolongo G, Bell J, Ellis M, Howell D, Shen X, Lafata KJ, Barisoni L. Li X, et al. J Med Imaging (Bellingham). 2021 Nov;8(6):067501. doi: 10.1117/1.JMI.8.6.067501. Epub 2021 Dec 20. J Med Imaging (Bellingham). 2021. PMID: 34950750 Free PMC article.
Quantification of Glomerular Structural Lesions: Associations With Clinical Outcomes and Transcriptomic Profiles in Nephrotic Syndrome.
Hodgin JB, Mariani LH, Zee J, Liu Q, Smith AR, Eddy S, Hartman J, Hamidi H, Gaut JP, Palmer MB, Nast CC, Chang A, Hewitt S, Gillespie BW, Kretzler M, Holzman LB, Barisoni L; Nephrotic Syndrome Study Network (NEPTUNE). Hodgin JB, et al. Am J Kidney Dis. 2022 Jun;79(6):807-819.e1. doi: 10.1053/j.ajkd.2021.10.004. Epub 2021 Dec 3. Am J Kidney Dis. 2022. PMID: 34864148 Free PMC article.
An end-to-end workflow for non-destructive 3D pathology.
Bishop KW, Barner LAE, Han Q, Baraznenok E, Lan L, Poudel C, Gao G, Serafin RB, Chow SSL, Glaser AK, Janowczyk A, Brenes D, Huang H, Miyasato D, True LD, Kang S, Vaughan JC, Liu JTC. Bishop KW, et al. bioRxiv [Preprint]. 2023 Aug 6:2023.08.03.551845. doi: 10.1101/2023.08.03.551845. bioRxiv. 2023. Update in: Nat Protoc. 2024 Apr;19(4):1122-1148. doi: 10.1038/s41596-023-00934-4 PMID: 37577615 Free PMC article. Updated. Preprint.
The prognostic value of tumor-stroma ratio and a newly developed computer-aided quantitative analysis of routine H&E slides in high-grade serous ovarian cancer.
van Wagensveld L, Walker C, Hahn K, Sanders J, Kruitwagen R, van der Aa M, Sonke G, Rottenberg S, Van de Vijver K, Janowczyk A, Horlings H. van Wagensveld L, et al. Res Sq [Preprint]. 2023 Nov 14:rs.3.rs-3511087. doi: 10.21203/rs.3.rs-3511087/v1. Res Sq. 2023. PMID: 38014112 Free PMC article. Preprint.
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