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Page 1
RLBWT Tricks.
Brown NK, Gagie T, Rossi M. Brown NK, et al. Lebniz Int Proc Inform. 2022 Jul;233:16. Epub 2022 Jul 11. Lebniz Int Proc Inform. 2022. PMID: 39157646 Free PMC article.
CSTs for Terabyte-Sized Data.
Oliva M, Cenzato D, Rossi M, Lipták Z, Gagie T, Boucher C. Oliva M, et al. Proc Data Compress Conf. 2022 Mar;2022:93-102. doi: 10.1109/dcc52660.2022.00017. Epub 2022 Jul 4. Proc Data Compress Conf. 2022. PMID: 38812828 Free PMC article.
Succinct dynamic de Bruijn graphs.
Alipanahi B, Kuhnle A, Puglisi SJ, Salmela L, Boucher C. Alipanahi B, et al. Bioinformatics. 2021 Aug 4;37(14):1946-1952. doi: 10.1093/bioinformatics/btaa546. Bioinformatics. 2021. PMID: 32462192 Free PMC article.
PFP Compressed Suffix Trees.
Boucher C, Cvacho O, Gagie T, Holub J, Manzini G, Navarro G, Rossi M. Boucher C, et al. Proc Worksh Algorithm Eng Exp. 2021;2021:60-72. doi: 10.1137/1.9781611976472.5. Proc Worksh Algorithm Eng Exp. 2021. PMID: 35355938 Free PMC article.
Prefix-free parsing for building big BWTs.
Boucher C, Gagie T, Kuhnle A, Langmead B, Manzini G, Mun T. Boucher C, et al. Algorithms Mol Biol. 2019 May 24;14:13. doi: 10.1186/s13015-019-0148-5. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 31149025 Free PMC article.
55 results