P41 RR024851/RR/NCRR NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2008	1
2009	5
2010	10
2011	17
2012	10
2013	9
2014	6
2017	2
2018	1
2019	1
2020	1
2024	0

1

QUAST: quality assessment tool for genome assemblies.

Gurevich A, Saveliev V, Vyahhi N, Tesler G. Gurevich A, et al. Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19. Bioinformatics. 2013. PMID: 23422339 Free PMC article.

2

Proteogenomics to discover the full coding content of genomes: a computational perspective.

Castellana N, Bafna V. Castellana N, et al. J Proteomics. 2010 Oct 10;73(11):2124-35. doi: 10.1016/j.jprot.2010.06.007. Epub 2010 Jul 8. J Proteomics. 2010. PMID: 20620248 Free PMC article. Review.

3

Protein identification using top-down.

Liu X, Sirotkin Y, Shen Y, Anderson G, Tsai YS, Ting YS, Goodlett DR, Smith RD, Bafna V, Pevzner PA. Liu X, et al. Mol Cell Proteomics. 2012 Jun;11(6):M111.008524. doi: 10.1074/mcp.M111.008524. Epub 2011 Oct 25. Mol Cell Proteomics. 2012. PMID: 22027200 Free PMC article.

4

The Antibody Repertoire of Colorectal Cancer.

Cha SW, Bonissone S, Na S, Pevzner PA, Bafna V. Cha SW, et al. Mol Cell Proteomics. 2017 Dec;16(12):2111-2124. doi: 10.1074/mcp.RA117.000397. Epub 2017 Oct 18. Mol Cell Proteomics. 2017. PMID: 29046389 Free PMC article.

5

The spectral networks paradigm in high throughput mass spectrometry.

Guthals A, Watrous JD, Dorrestein PC, Bandeira N. Guthals A, et al. Mol Biosyst. 2012 Oct;8(10):2535-44. doi: 10.1039/c2mb25085c. Mol Biosyst. 2012. PMID: 22610447 Free PMC article. Review.

6

Peptide identification by tandem mass spectrometry with alternate fragmentation modes.

Guthals A, Bandeira N. Guthals A, et al. Mol Cell Proteomics. 2012 Sep;11(9):550-7. doi: 10.1074/mcp.R112.018556. Epub 2012 May 17. Mol Cell Proteomics. 2012. PMID: 22595789 Free PMC article. Review.

7

Neuropeptidomic components generated by proteomic functions in secretory vesicles for cell-cell communication.

Hook V, Bark S, Gupta N, Lortie M, Lu WD, Bandeira N, Funkelstein L, Wegrzyn J, O'Connor DT, Pevzner P. Hook V, et al. AAPS J. 2010 Dec;12(4):635-45. doi: 10.1208/s12248-010-9223-z. Epub 2010 Aug 24. AAPS J. 2010. PMID: 20734175 Free PMC article. Review.

8

ProteoStorm: An Ultrafast Metaproteomics Database Search Framework.

Beyter D, Lin MS, Yu Y, Pieper R, Bafna V. Beyter D, et al. Cell Syst. 2018 Oct 24;7(4):463-467.e6. doi: 10.1016/j.cels.2018.08.009. Epub 2018 Sep 26. Cell Syst. 2018. PMID: 30268435 Free PMC article.

9

NeuroPedia: neuropeptide database and spectral library.

Kim Y, Bark S, Hook V, Bandeira N. Kim Y, et al. Bioinformatics. 2011 Oct 1;27(19):2772-3. doi: 10.1093/bioinformatics/btr445. Epub 2011 Aug 5. Bioinformatics. 2011. PMID: 21821666 Free PMC article.

10

Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements.

Li S, Cha SW, Heffner K, Hizal DB, Bowen MA, Chaerkady R, Cole RN, Tejwani V, Kaushik P, Henry M, Meleady P, Sharfstein ST, Betenbaugh MJ, Bafna V, Lewis NE. Li S, et al. J Proteome Res. 2019 Jun 7;18(6):2433-2445. doi: 10.1021/acs.jproteome.8b00935. Epub 2019 May 8. J Proteome Res. 2019. PMID: 31020842 Free PMC article.

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