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Page 1
Alignment of whole genomes.
Delcher AL, Kasif S, Fleischmann RD, Peterson J, White O, Salzberg SL. Delcher AL, et al. Nucleic Acids Res. 1999 Jun 1;27(11):2369-76. doi: 10.1093/nar/27.11.2369. Nucleic Acids Res. 1999. PMID: 10325427 Free PMC article.
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Delcher AL, et al. Nucleic Acids Res. 1999 Dec 1;27(23):4636-41. doi: 10.1093/nar/27.23.4636. Nucleic Acids Res. 1999. PMID: 10556321 Free PMC article.
Skewed oligomers and origins of replication.
Salzberg SL, Salzberg AJ, Kerlavage AR, Tomb JF. Salzberg SL, et al. Gene. 1998 Sep 14;217(1-2):57-67. doi: 10.1016/s0378-1119(98)00374-6. Gene. 1998. PMID: 9795135 Free article.
A decision tree system for finding genes in DNA.
Salzberg S, Delcher AL, Fasman KH, Henderson J. Salzberg S, et al. J Comput Biol. 1998 Winter;5(4):667-80. doi: 10.1089/cmb.1998.5.667. J Comput Biol. 1998. PMID: 10072083
Interpolated Markov models for eukaryotic gene finding.
Salzberg SL, Pertea M, Delcher AL, Gardner MJ, Tettelin H. Salzberg SL, et al. Genomics. 1999 Jul 1;59(1):24-31. doi: 10.1006/geno.1999.5854. Genomics. 1999. PMID: 10395796 Free article.
Finding genes in DNA with a Hidden Markov Model.
Henderson J, Salzberg S, Fasman KH. Henderson J, et al. J Comput Biol. 1997 Summer;4(2):127-41. doi: 10.1089/cmb.1997.4.127. J Comput Biol. 1997. PMID: 9228612