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Bayesian inference of sample-specific coexpression networks.
Saha E, Fanfani V, Mandros P, Ben Guebila M, Fischer J, Shutta KH, DeMeo DL, Lopes-Ramos CM, Quackenbush J. Saha E, et al. Genome Res. 2024 Oct 11;34(9):1397-1410. doi: 10.1101/gr.279117.124. Genome Res. 2024. PMID: 39134413 Free PMC article.
Reproducible processing of TCGA regulatory networks.
Fanfani V, Shutta KH, Mandros P, Fischer J, Saha E, Micheletti S, Chen C, Guebila MB, Lopes-Ramos CM, Quackenbush J. Fanfani V, et al. bioRxiv [Preprint]. 2024 Nov 7:2024.11.05.622163. doi: 10.1101/2024.11.05.622163. bioRxiv. 2024. PMID: 39574772 Free PMC article. Preprint.
Sex-biased Regulation of Extracellular Matrix Genes in COPD.
Lopes-Ramos CM, Shutta KH, Ryu MH, Huang Y, Saha E, Ziniti J, Chase R, Hobbs BD, Yun JH, Castaldi P, Hersh CP, Glass K, Silverman EK, Quackenbush J, DeMeo DL. Lopes-Ramos CM, et al. Am J Respir Cell Mol Biol. 2024 Aug 5;72(1):72-81. doi: 10.1165/rcmb.2024-0226OC. Online ahead of print. Am J Respir Cell Mol Biol. 2024. PMID: 39102858
Gene regulatory networks reveal sex difference in lung adenocarcinoma.
Saha E, Ben Guebila M, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM. Saha E, et al. Biol Sex Differ. 2024 Aug 6;15(1):62. doi: 10.1186/s13293-024-00634-y. Biol Sex Differ. 2024. PMID: 39107837 Free PMC article.