GM074127/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2006	1
2007	2
2008	3
2009	1
2011	1
2015	1
2024	0

1

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB 3rd, Snoeyink J, Richardson JS, Richardson DC. Davis IW, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. doi: 10.1093/nar/gkm216. Epub 2007 Apr 22. Nucleic Acids Res. 2007. PMID: 17452350 Free PMC article.

2

Computational Methods for RNA Structure Validation and Improvement.

Jain S, Richardson DC, Richardson JS. Jain S, et al. Methods Enzymol. 2015;558:181-212. doi: 10.1016/bs.mie.2015.01.007. Epub 2015 Apr 2. Methods Enzymol. 2015. PMID: 26068742

3

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.

Dunkle JA, Wang L, Feldman MB, Pulk A, Chen VB, Kapral GJ, Noeske J, Richardson JS, Blanchard SC, Cate JH. Dunkle JA, et al. Science. 2011 May 20;332(6032):981-4. doi: 10.1126/science.1202692. Science. 2011. PMID: 21596992 Free PMC article.

4

Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place.

Headd JJ, Immormino RM, Keedy DA, Emsley P, Richardson DC, Richardson JS. Headd JJ, et al. J Struct Funct Genomics. 2009 Mar;10(1):83-93. doi: 10.1007/s10969-008-9045-8. Epub 2008 Nov 11. J Struct Funct Genomics. 2009. PMID: 19002604 Free PMC article.

5

The RNA Ontology Consortium: an open invitation to the RNA community.

Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E. Leontis NB, et al. RNA. 2006 Apr;12(4):533-41. doi: 10.1261/rna.2343206. Epub 2006 Feb 16. RNA. 2006. PMID: 16484377 Free PMC article.

6

RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone.

Wang X, Kapral G, Murray L, Richardson D, Richardson J, Snoeyink J. Wang X, et al. J Math Biol. 2008 Jan;56(1-2):253-78. doi: 10.1007/s00285-007-0082-x. Epub 2007 Mar 31. J Math Biol. 2008. PMID: 17401565 Free PMC article.

7

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution).

Richardson JS, Schneider B, Murray LW, Kapral GJ, Immormino RM, Headd JJ, Richardson DC, Ham D, Hershkovits E, Williams LD, Keating KS, Pyle AM, Micallef D, Westbrook J, Berman HM; RNA Ontology Consortium. Richardson JS, et al. RNA. 2008 Mar;14(3):465-81. doi: 10.1261/rna.657708. Epub 2008 Jan 11. RNA. 2008. PMID: 18192612 Free PMC article.

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