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Page 1
The ClusPro web server for protein-protein docking.
Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. Kozakov D, et al. Nat Protoc. 2017 Feb;12(2):255-278. doi: 10.1038/nprot.2016.169. Epub 2017 Jan 12. Nat Protoc. 2017. PMID: 28079879 Free PMC article.
Sampling and scoring: a marriage made in heaven.
Vajda S, Hall DR, Kozakov D. Vajda S, et al. Proteins. 2013 Nov;81(11):1874-84. doi: 10.1002/prot.24343. Epub 2013 Aug 19. Proteins. 2013. PMID: 23775627 Free PMC article. Review.
Challenges in structural approaches to cell modeling.
Im W, Liang J, Olson A, Zhou HX, Vajda S, Vakser IA. Im W, et al. J Mol Biol. 2016 Jul 31;428(15):2943-64. doi: 10.1016/j.jmb.2016.05.024. Epub 2016 May 30. J Mol Biol. 2016. PMID: 27255863 Free PMC article. Review.
Organization of the human mitochondrial transcription initiation complex.
Yakubovskaya E, Guja KE, Eng ET, Choi WS, Mejia E, Beglov D, Lukin M, Kozakov D, Garcia-Diaz M. Yakubovskaya E, et al. Nucleic Acids Res. 2014 Apr;42(6):4100-12. doi: 10.1093/nar/gkt1360. Epub 2014 Jan 9. Nucleic Acids Res. 2014. PMID: 24413562 Free PMC article.
New additions to the ClusPro server motivated by CAPRI.
Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D. Vajda S, et al. Proteins. 2017 Mar;85(3):435-444. doi: 10.1002/prot.25219. Epub 2017 Jan 5. Proteins. 2017. PMID: 27936493 Free PMC article.
How good is automated protein docking?
Kozakov D, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Vajda S. Kozakov D, et al. Proteins. 2013 Dec;81(12):2159-66. doi: 10.1002/prot.24403. Epub 2013 Oct 17. Proteins. 2013. PMID: 23996272 Free PMC article.
58 results