Birney E - Search Results

1

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.

Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer EL. Bateman A, et al. Among authors: birney e. Nucleic Acids Res. 1999 Jan 1;27(1):260-2. doi: 10.1093/nar/27.1.260. Nucleic Acids Res. 1999. PMID: 9847196 Free PMC article.

2

PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames.

Birney E, Thompson JD, Gibson TJ. Birney E, et al. Nucleic Acids Res. 1996 Jul 15;24(14):2730-9. doi: 10.1093/nar/24.14.2730. Nucleic Acids Res. 1996. PMID: 8759004 Free PMC article.

3

Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison.

Birney E, Durbin R. Birney E, et al. Proc Int Conf Intell Syst Mol Biol. 1997;5:56-64. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322016

4

Pfam: multiple sequence alignments and HMM-profiles of protein domains.

Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R. Sonnhammer EL, et al. Among authors: birney e. Nucleic Acids Res. 1998 Jan 1;26(1):320-2. doi: 10.1093/nar/26.1.320. Nucleic Acids Res. 1998. PMID: 9399864 Free PMC article.

5

SPEM: a parser for EMBL style flat file database entries.

Pocock MR, Hubbard T, Birney E. Pocock MR, et al. Among authors: birney e. Bioinformatics. 1998;14(9):823-4. doi: 10.1093/bioinformatics/14.9.823. Bioinformatics. 1998. PMID: 9918956 Review.

6

Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs.

Jareborg N, Birney E, Durbin R. Jareborg N, et al. Among authors: birney e. Genome Res. 1999 Sep;9(9):815-24. doi: 10.1101/gr.9.9.815. Genome Res. 1999. PMID: 10508839 Free PMC article.

7

The Pfam protein families database.

Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL. Bateman A, et al. Among authors: birney e. Nucleic Acids Res. 2000 Jan 1;28(1):263-6. doi: 10.1093/nar/28.1.263. Nucleic Acids Res. 2000. PMID: 10592242 Free PMC article.

8

Using GeneWise in the Drosophila annotation experiment.

Birney E, Durbin R. Birney E, et al. Genome Res. 2000 Apr;10(4):547-8. doi: 10.1101/gr.10.4.547. Genome Res. 2000. PMID: 10779496 Free PMC article.

9

Searching databases to find protein domain organization.

Bateman A, Birney E. Bateman A, et al. Among authors: birney e. Adv Protein Chem. 2000;54:137-57. doi: 10.1016/s0065-3233(00)54005-4. Adv Protein Chem. 2000. PMID: 10829227 Review. No abstract available.

10

ProtEST: protein multiple sequence alignments from expressed sequence tags.

Cuff JA, Birney E, Clamp ME, Barton GJ. Cuff JA, et al. Among authors: birney e. Bioinformatics. 2000 Feb;16(2):111-6. doi: 10.1093/bioinformatics/16.2.111. Bioinformatics. 2000. PMID: 10842731

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