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Integration of 168,000 samples reveals global patterns of the human gut microbiome.
Abdill RJ, Graham SP, Rubinetti V, Ahmadian M, Hicks P, Chetty A, McDonald D, Ferretti P, Gibbons E, Rossi M, Krishnan A, Albert FW, Greene CS, Davis S, Blekhman R. Abdill RJ, et al. Among authors: mcdonald d. Cell. 2025 Jan 16:S0092-8674(24)01430-2. doi: 10.1016/j.cell.2024.12.017. Online ahead of print. Cell. 2025. PMID: 39848248 Free article.
Comparison of sampling and culture methods for the recovery of yeast from hospital surfaces.
Eberly AR, Valencia AM, Peacock K, McDonald D, Hink T, Samuels C, Vogt L, Xue YP, Newberry M, O'Neil CA, Dantas G, Kwon JH. Eberly AR, et al. Among authors: mcdonald d. Antimicrob Steward Healthc Epidemiol. 2025 Jan 17;5(1):e10. doi: 10.1017/ash.2024.481. eCollection 2025. Antimicrob Steward Healthc Epidemiol. 2025. PMID: 39839357 Free PMC article.
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.
Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Hightower G, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R. Guccione C, et al. Among authors: mcdonald d. Nat Commun. 2025 Jan 18;16(1):825. doi: 10.1038/s41467-025-56077-5. Nat Commun. 2025. PMID: 39827261 Free PMC article.
Medication use is associated with distinct microbial features in anxiety and depression.
Dilmore AH, Kuplicki R, McDonald D, Kumar M, Estaki M, Youngblut N, Tyakht A, Ackermann G, Blach C, MahmoudianDehkordi S, Dunlop BW, Bhattacharyya S, Guinjoan S, Mandaviya P, Ley RE, Kaddaruh-Dauok R, Paulus MP, Knight R; Alzheimer Gut Microbiome Project Consortium. Dilmore AH, et al. Among authors: mcdonald d. Mol Psychiatry. 2025 Jan 10. doi: 10.1038/s41380-024-02857-2. Online ahead of print. Mol Psychiatry. 2025. PMID: 39794490
1,724 results