Banavali N - Search Results

1

Cloning and characterization of the gene encoding 1-cyclohexenylcarbonyl coenzyme A reductase from Streptomyces collinus.

Wang P, Denoya CD, Morgenstern MR, Skinner DD, Wallace KK, Digate R, Patton S, Banavali N, Schuler G, Speedie MK, Reynolds KA. Wang P, et al. Among authors: banavali n. J Bacteriol. 1996 Dec;178(23):6873-81. doi: 10.1128/jb.178.23.6873-6881.1996. J Bacteriol. 1996. PMID: 8955309 Free PMC article.

2

Inhibition of (cytosine C5)-methyltransferase by oligonucleotides containing flexible (cyclopentane) and conformationally constrained (bicyclo[3.1.0]hexane) abasic sites.

Marquez VE, Wang P, Nicklaus MC, Maier M, Manoharan M, Christman JK, Banavali NK, Mackerell AD Jr. Marquez VE, et al. Among authors: banavali nk. Nucleosides Nucleotides Nucleic Acids. 2001 Apr-Jul;20(4-7):451-9. doi: 10.1081/NCN-100002319. Nucleosides Nucleotides Nucleic Acids. 2001. PMID: 11563060 Review.

3

Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase.

Huang N, Banavali NK, MacKerell AD Jr. Huang N, et al. Among authors: banavali nk. Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):68-73. doi: 10.1073/pnas.0135427100. Epub 2002 Dec 27. Proc Natl Acad Sci U S A. 2003. PMID: 12506195 Free PMC article.

4

Free energy and structural pathways of base flipping in a DNA GCGC containing sequence.

Banavali NK, MacKerell AD Jr. Banavali NK, et al. J Mol Biol. 2002 May 24;319(1):141-60. doi: 10.1016/S0022-2836(02)00194-8. J Mol Biol. 2002. PMID: 12051942

5

Conserved patterns in backbone torsional changes allow for single base flipping from duplex DNA with minimal distortion of the double helix.

Banavali NK, Huang N, MacKerell AD Jr. Banavali NK, et al. J Phys Chem B. 2006 Jun 8;110(22):10997-1004. doi: 10.1021/jp0561322. J Phys Chem B. 2006. PMID: 16771353 Free PMC article.

6

DNA bending induced by carbocyclic sugar analogs constrained to the north conformation.

Macias AT, Banavali NK, MacKerell AD Jr. Macias AT, et al. Biopolymers. 2007 Apr 5-15;85(5-6):438-49. doi: 10.1002/bip.20673. Biopolymers. 2007. PMID: 17211887 Free PMC article.

7

Reevaluation of stereoelectronic contributions to the conformational properties of the phosphodiester and N3'-phosphoramidate moieties of nucleic acids.

Banavali NK, MacKerell AD Jr. Banavali NK, et al. J Am Chem Soc. 2001 Jul 18;123(28):6747-55. doi: 10.1021/ja010295w. J Am Chem Soc. 2001. PMID: 11448177

8

Re-examination of the intrinsic, dynamic and hydration properties of phosphoramidate DNA.

Banavali NK, MacKerell AD. Banavali NK, et al. Nucleic Acids Res. 2001 Aug 1;29(15):3219-30. doi: 10.1093/nar/29.15.3219. Nucleic Acids Res. 2001. PMID: 11470880 Free PMC article.

9

Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase.

Horton JR, Ratner G, Banavali NK, Huang N, Choi Y, Maier MA, Marquez VE, MacKerell AD Jr, Cheng X. Horton JR, et al. Among authors: banavali nk. Nucleic Acids Res. 2004 Jul 23;32(13):3877-86. doi: 10.1093/nar/gkh701. Print 2004. Nucleic Acids Res. 2004. PMID: 15273274 Free PMC article.

10

Characterizing structural transitions using localized free energy landscape analysis.

Banavali NK, Mackerell AD Jr. Banavali NK, et al. PLoS One. 2009;4(5):e5525. doi: 10.1371/journal.pone.0005525. Epub 2009 May 13. PLoS One. 2009. PMID: 19436759 Free PMC article.

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