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Uniform volumetric single-cell processing for organ-scale molecular phenotyping.
Yun DH, Park YG, Cho JH, Kamentsky L, Evans NB, DiNapoli N, Xie K, Choi SW, Albanese A, Tian Y, Sohn CH, Zhang Q, Kim ME, Swaney J, Guan W, Park J, Drummond G, Choi H, Ruelas L, Feng G, Chung K. Yun DH, et al. Among authors: kamentsky l. Nat Biotechnol. 2025 Jan 24. doi: 10.1038/s41587-024-02533-4. Online ahead of print. Nat Biotechnol. 2025. PMID: 39856430
Integrated platform for multiscale molecular imaging and phenotyping of the human brain.
Park J, Wang J, Guan W, Gjesteby LA, Pollack D, Kamentsky L, Evans NB, Stirman J, Gu X, Zhao C, Marx S, Kim ME, Choi SW, Snyder M, Chavez D, Su-Arcaro C, Tian Y, Park CS, Zhang Q, Yun DH, Moukheiber M, Feng G, Yang XW, Keene CD, Hof PR, Ghosh SS, Frosch MP, Brattain LJ, Chung K. Park J, et al. Among authors: kamentsky l. Science. 2024 Jun 14;384(6701):eadh9979. doi: 10.1126/science.adh9979. Epub 2024 Jun 14. Science. 2024. PMID: 38870291
Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets.
Pollack D, Gjesteby LA, Snyder M, Chavez D, Kamentsky L, Chung K, Brattain LJ. Pollack D, et al. Among authors: kamentsky l. Annu Int Conf IEEE Eng Med Biol Soc. 2022 Jul;2022:238-242. doi: 10.1109/EMBC48229.2022.9870879. Annu Int Conf IEEE Eng Med Biol Soc. 2022. PMID: 36085649
Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data.
Bourget MH, Kamentsky L, Ghosh SS, Mazzamuto G, Lazari A, Markiewicz CJ, Oostenveld R, Niso G, Halchenko YO, Lipp I, Takerkart S, Toussaint PJ, Khan AR, Nilsonne G, Castelli FM; BIDS Maintainers; Cohen-Adad J. Bourget MH, et al. Among authors: kamentsky l. Front Neurosci. 2022 Apr 19;16:871228. doi: 10.3389/fnins.2022.871228. eCollection 2022. Front Neurosci. 2022. PMID: 35516811 Free PMC article.
Two Stream Active Query Suggestion for Active Learning in Connectomics.
Lin Z, Wei D, Jang WD, Zhou S, Chen X, Wang X, Schalek R, Berger D, Matejek B, Kamentsky L, Peleg A, Haehn D, Jones T, Parag T, Lichtman J, Pfister H. Lin Z, et al. Among authors: kamentsky l. Comput Vis ECCV. 2020 Aug;12363:103-120. doi: 10.1007/978-3-030-58523-5_7. Epub 2020 Dec 4. Comput Vis ECCV. 2020. PMID: 33345257 Free PMC article.
CellProfiler 3.0: Next-generation image processing for biology.
McQuin C, Goodman A, Chernyshev V, Kamentsky L, Cimini BA, Karhohs KW, Doan M, Ding L, Rafelski SM, Thirstrup D, Wiegraebe W, Singh S, Becker T, Caicedo JC, Carpenter AE. McQuin C, et al. Among authors: kamentsky l. PLoS Biol. 2018 Jul 3;16(7):e2005970. doi: 10.1371/journal.pbio.2005970. eCollection 2018 Jul. PLoS Biol. 2018. PMID: 29969450 Free PMC article.
Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening.
Neves BJ, Dantas RF, Senger MR, Melo-Filho CC, Valente WC, de Almeida AC, Rezende-Neto JM, Lima EF, Paveley R, Furnham N, Muratov E, Kamentsky L, Carpenter AE, Braga RC, Silva-Junior FP, Andrade CH. Neves BJ, et al. Among authors: kamentsky l. J Med Chem. 2016 Aug 11;59(15):7075-88. doi: 10.1021/acs.jmedchem.5b02038. Epub 2016 Jul 22. J Med Chem. 2016. PMID: 27396732 Free PMC article.
QSAR-Driven Discovery of Novel Chemical Scaffolds Active against Schistosoma mansoni.
Melo-Filho CC, Dantas RF, Braga RC, Neves BJ, Senger MR, Valente WC, Rezende-Neto JM, Chaves WT, Muratov EN, Paveley RA, Furnham N, Kamentsky L, Carpenter AE, Silva-Junior FP, Andrade CH. Melo-Filho CC, et al. Among authors: kamentsky l. J Chem Inf Model. 2016 Jul 25;56(7):1357-72. doi: 10.1021/acs.jcim.6b00055. Epub 2016 Jun 16. J Chem Inf Model. 2016. PMID: 27253773 Free PMC article.
47 results