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A map of the rubisco biochemical landscape.
Prywes N, Phillips NR, Oltrogge LM, Lindner S, Taylor-Kearney LJ, Tsai YC, de Pins B, Cowan AE, Chang HA, Wang RZ, Hall LN, Bellieny-Rabelo D, Nisonoff HM, Weissman RF, Flamholz AI, Ding D, Bhatt AY, Mueller-Cajar O, Shih PM, Milo R, Savage DF. Prywes N, et al. Among authors: ding d. Nature. 2025 Jan 22. doi: 10.1038/s41586-024-08455-0. Online ahead of print. Nature. 2025. PMID: 39843747
A map of the rubisco biochemical landscape.
Prywes N, Philips NR, Oltrogge LM, Lindner S, Candace Tsai YC, de Pins B, Cowan AE, Taylor-Kearney LJ, Chang HA, Hall LN, Bellieny-Rabelo D, Nisonoff HM, Weissman RF, Flamholz AI, Ding D, Bhatt AY, Shih PM, Mueller-Cajar O, Milo R, Savage DF. Prywes N, et al. Among authors: ding d. bioRxiv [Preprint]. 2024 Apr 11:2023.09.27.559826. doi: 10.1101/2023.09.27.559826. bioRxiv. 2024. Update in: Nature. 2025 Jan 22. doi: 10.1038/s41586-024-08455-0. PMID: 38645011 Free PMC article. Updated. Preprint.
Protein design using structure-based residue preferences.
Ding D, Shaw AY, Sinai S, Rollins N, Prywes N, Savage DF, Laub MT, Marks DS. Ding D, et al. Nat Commun. 2024 Feb 22;15(1):1639. doi: 10.1038/s41467-024-45621-4. Nat Commun. 2024. PMID: 38388493 Free PMC article.
Biodegradation of CAHs and BTEX in groundwater at a multi-polluted pesticide site undergoing natural attenuation: Insights from identifying key bioindicators using machine learning methods based on microbiome data.
Xia F, Fan T, Wang M, Yang L, Ding D, Wei J, Zhou Y, Jiang D, Deng S. Xia F, et al. Among authors: ding d. Ecotoxicol Environ Saf. 2025 Feb 1;291:117609. doi: 10.1016/j.ecoenv.2024.117609. Online ahead of print. Ecotoxicol Environ Saf. 2025. PMID: 39893882 Free article.
4,123 results