Hemberg M - Search Results

1

The topography of nullomer-emerging mutations and their relevance to human disease.

Chan CSY, Mouratidis I, Montgomery A, Tsiatsianis GC, Chantzi N, Hemberg M, Ahituv N, Georgakopoulos-Soares I. Chan CSY, et al. Among authors: hemberg m. Comput Struct Biotechnol J. 2024 Dec 25;30:1-11. doi: 10.1016/j.csbj.2024.12.026. eCollection 2025. Comput Struct Biotechnol J. 2024. PMID: 39839549 Free PMC article.

2

MEA-NAP: A flexible network analysis pipeline for neuronal 2D and 3D organoid multielectrode recordings.

Sit TPH, Feord RC, Dunn AWE, Chabros J, Oluigbo D, Smith HH, Burn L, Chang E, Boschi A, Yuan Y, Gibbons GM, Khayat-Khoei M, De Angelis F, Hemberg E, Hemberg M, Lancaster MA, Lakatos A, Eglen SJ, Paulsen O, Mierau SB. Sit TPH, et al. Among authors: hemberg m. Cell Rep Methods. 2024 Nov 18;4(11):100901. doi: 10.1016/j.crmeth.2024.100901. Epub 2024 Nov 8. Cell Rep Methods. 2024. PMID: 39520988 Free PMC article.

3

Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment.

Shiau C, Cao J, Gong D, Gregory MT, Caldwell NJ, Yin X, Cho JW, Wang PL, Su J, Wang S, Reeves JW, Kim TK, Kim Y, Guo JA, Lester NA, Bae JW, Zhao R, Schurman N, Barth JL, Ganci ML, Weissleder R, Jacks T, Qadan M, Hong TS, Wo JY, Roberts H, Beechem JM, Castillo CF, Mino-Kenudson M, Ting DT, Hemberg M, Hwang WL. Shiau C, et al. Among authors: hemberg m. Nat Genet. 2024 Nov;56(11):2466-2478. doi: 10.1038/s41588-024-01890-9. Epub 2024 Sep 3. Nat Genet. 2024. PMID: 39227743

4

Mining alternative splicing patterns in scRNA-seq data using scASfind.

Song Y, Parada G, Lee JTH, Hemberg M. Song Y, et al. Among authors: hemberg m. Genome Biol. 2024 Jul 29;25(1):197. doi: 10.1186/s13059-024-03323-6. Genome Biol. 2024. PMID: 39075577 Free PMC article.

5

A metabolic switch orchestrated by IL-18 and the cyclic dinucleotide cGAMP programs intestinal tolerance.

Mertens RT, Misra A, Xiao P, Baek S, Rone JM, Mangani D, Sivanathan KN, Arojojoye AS, Awuah SG, Lee I, Shi GP, Petrova B, Brook JR, Anderson AC, Flavell RA, Kanarek N, Hemberg M, Nowarski R. Mertens RT, et al. Among authors: hemberg m. Immunity. 2024 Sep 10;57(9):2077-2094.e12. doi: 10.1016/j.immuni.2024.06.001. Epub 2024 Jun 20. Immunity. 2024. PMID: 38906145

6

Single-cell analysis reveals cellular and molecular factors counteracting HPV-positive oropharyngeal cancer immunotherapy outcomes.

Cha J, Kim DH, Kim G, Cho JW, Sung E, Baek S, Hong MH, Kim CG, Sim NS, Hong HJ, Lee JE, Hemberg M, Park S, Yoon SO, Ha SJ, Koh YW, Kim HR, Lee I. Cha J, et al. Among authors: hemberg m. J Immunother Cancer. 2024 Jun 10;12(6):e008667. doi: 10.1136/jitc-2023-008667. J Immunother Cancer. 2024. PMID: 38857913 Free PMC article.

7

ApoE ε4-dependent alteration of CXCR3 ⁺ CD127 ⁺ CD4 ⁺ T cells is associated with elevated plasma neurofilament light chain in Alzheimer's disease.

Hu D, Chen M, Li X, Morin P, Daley S, Han Y, Hemberg M, Weiner HL, Xia W. Hu D, et al. Among authors: hemberg m. bioRxiv [Preprint]. 2024 Jul 17:2024.05.28.596276. doi: 10.1101/2024.05.28.596276. bioRxiv. 2024. PMID: 38853824 Free PMC article. Preprint.

8

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods.

Neavin D, Senabouth A, Arora H, Lee JTH, Ripoll-Cladellas A; sc-eQTLGen Consortium; Franke L, Prabhakar S, Ye CJ, McCarthy DJ, Melé M, Hemberg M, Powell JE. Neavin D, et al. Among authors: hemberg m. Genome Biol. 2024 Apr 15;25(1):94. doi: 10.1186/s13059-024-03224-8. Genome Biol. 2024. PMID: 38622708 Free PMC article.

9

Integrative analysis of transcriptomic and epigenomic data reveals distinct patterns for developmental and housekeeping gene regulation.

Abnizova I, Stapel C, Boekhorst RT, Lee JTH, Hemberg M. Abnizova I, et al. Among authors: hemberg m. BMC Biol. 2024 Apr 10;22(1):78. doi: 10.1186/s12915-024-01869-2. BMC Biol. 2024. PMID: 38600550 Free PMC article.

10

Joint analysis of mutational and transcriptional landscapes in human cancer reveals key perturbations during cancer evolution.

Cho JW, Cao J, Hemberg M. Cho JW, et al. Among authors: hemberg m. Genome Biol. 2024 Mar 8;25(1):65. doi: 10.1186/s13059-024-03201-1. Genome Biol. 2024. PMID: 38459554 Free PMC article.

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