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R2DT: A COMPREHENSIVE PLATFORM FOR VISUALISING RNA SECONDARY STRUCTURE.
McCann H, Meade CD, Williams LD, Petrov AS, Johnson PZ, Simon AE, Hoksza D, Nawrocki EP, Chan PP, Lowe TM, Ribas CE, Sweeney BA, Madeira F, Anyango S, Appasamy SD, Deshpande M, Varadi M, Velankar S, Zirbel CL, Naiden A, Jossinet F, Petrov AI. McCann H, et al. Among authors: zirbel cl. bioRxiv [Preprint]. 2024 Sep 30:2024.09.29.611006. doi: 10.1101/2024.09.29.611006. bioRxiv. 2024. PMID: 39803519 Free PMC article. Preprint.
R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
Cannone JJ, Sweeney BA, Petrov AI, Gutell RR, Zirbel CL, Leontis N. Cannone JJ, et al. Among authors: zirbel cl. Nucleic Acids Res. 2015 Jul 1;43(W1):W15-23. doi: 10.1093/nar/gkv543. Epub 2015 Jun 5. Nucleic Acids Res. 2015. PMID: 26048960 Free PMC article.
Identifying novel sequence variants of RNA 3D motifs.
Zirbel CL, Roll J, Sweeney BA, Petrov AI, Pirrung M, Leontis NB. Zirbel CL, et al. Nucleic Acids Res. 2015 Sep 3;43(15):7504-20. doi: 10.1093/nar/gkv651. Epub 2015 Jun 29. Nucleic Acids Res. 2015. PMID: 26130723 Free PMC article.
The Nucleic Acid Database: new features and capabilities.
Coimbatore Narayanan B, Westbrook J, Ghosh S, Petrov AI, Sweeney B, Zirbel CL, Leontis NB, Berman HM. Coimbatore Narayanan B, et al. Among authors: zirbel cl. Nucleic Acids Res. 2014 Jan;42(Database issue):D114-22. doi: 10.1093/nar/gkt980. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185695 Free PMC article.
36 results