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R2DT: A COMPREHENSIVE PLATFORM FOR VISUALISING RNA SECONDARY STRUCTURE.
McCann H, Meade CD, Williams LD, Petrov AS, Johnson PZ, Simon AE, Hoksza D, Nawrocki EP, Chan PP, Lowe TM, Ribas CE, Sweeney BA, Madeira F, Anyango S, Appasamy SD, Deshpande M, Varadi M, Velankar S, Zirbel CL, Naiden A, Jossinet F, Petrov AI. McCann H, et al. Among authors: nawrocki ep. bioRxiv [Preprint]. 2024 Sep 30:2024.09.29.611006. doi: 10.1101/2024.09.29.611006. bioRxiv. 2024. PMID: 39803519 Free PMC article. Preprint.
Rfam 15: RNA families database in 2025.
Ontiveros-Palacios N, Cooke E, Nawrocki EP, Triebel S, Marz M, Rivas E, Griffiths-Jones S, Petrov AI, Bateman A, Sweeney B. Ontiveros-Palacios N, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2025 Jan 6;53(D1):D258-D267. doi: 10.1093/nar/gkae1023. Nucleic Acids Res. 2025. PMID: 39526405 Free PMC article.
Non-Coding RNA Analysis Using the Rfam Database.
Kalvari I, Nawrocki EP, Argasinska J, Quinones-Olvera N, Finn RD, Bateman A, Petrov AI. Kalvari I, et al. Among authors: nawrocki ep. Curr Protoc Bioinformatics. 2018 Jun;62(1):e51. doi: 10.1002/cpbi.51. Epub 2018 Jun 5. Curr Protoc Bioinformatics. 2018. PMID: 29927072 Free PMC article.
RNAcentral: a hub of information for non-coding RNA sequences.
The RNAcentral Consortium. The RNAcentral Consortium. Nucleic Acids Res. 2019 Jan 8;47(D1):D1250-D1251. doi: 10.1093/nar/gky1206. Nucleic Acids Res. 2019. PMID: 30535383 Free PMC article. No abstract available.
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI. Kalvari I, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2018 Jan 4;46(D1):D335-D342. doi: 10.1093/nar/gkx1038. Nucleic Acids Res. 2018. PMID: 29112718 Free PMC article.
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Kalvari I, et al. Among authors: nawrocki ep. Nucleic Acids Res. 2021 Jan 8;49(D1):D192-D200. doi: 10.1093/nar/gkaa1047. Nucleic Acids Res. 2021. PMID: 33211869 Free PMC article.
39 results