Tegner J - Search Results

1

Benchmarking cross-species single-cell RNA-seq data integration methods: towards a cell type tree of life.

Zhong H, Han W, Gomez-Cabrero D, Tegner J, Gao X, Cui G, Aranda M. Zhong H, et al. Among authors: tegner j. Nucleic Acids Res. 2025 Jan 7;53(1):gkae1316. doi: 10.1093/nar/gkae1316. Nucleic Acids Res. 2025. PMID: 39778870 Free PMC article.

2

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

Jansen C, Ramirez RN, El-Ali NC, Gomez-Cabrero D, Tegner J, Merkenschlager M, Conesa A, Mortazavi A. Jansen C, et al. Among authors: tegner j. PLoS Comput Biol. 2019 Nov 4;15(11):e1006555. doi: 10.1371/journal.pcbi.1006555. eCollection 2019 Nov. PLoS Comput Biol. 2019. PMID: 31682608 Free PMC article.

3

MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells.

Sumida N, Sifakis EG, Kiani NA, Ronnegren AL, Scholz BA, Vestlund J, Gomez-Cabrero D, Tegner J, Göndör A, Ohlsson R. Sumida N, et al. Among authors: tegner j. Nucleic Acids Res. 2020 Nov 4;48(19):10867-10876. doi: 10.1093/nar/gkaa817. Nucleic Acids Res. 2020. PMID: 33051686 Free PMC article.

4

Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells.

Éliás S, Schmidt A, Gomez-Cabrero D, Tegnér J. Éliás S, et al. Among authors: tegner j. J Immunol Res. 2021 Jul 3;2021:8880585. doi: 10.1155/2021/8880585. eCollection 2021. J Immunol Res. 2021. PMID: 34285924 Free PMC article.

5

scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences.

Khan SA, Lehmann R, Martinez-de-Morentin X, Maillo A, Lagani V, Kiani NA, Gomez-Cabrero D, Tegner J. Khan SA, et al. Among authors: tegner j. PLoS One. 2023 Feb 3;18(2):e0281315. doi: 10.1371/journal.pone.0281315. eCollection 2023. PLoS One. 2023. PMID: 36735690 Free PMC article.

6

Predicting anti-PD-1 responders in malignant melanoma from the frequency of S100A9+ monocytes in the blood.

Rad Pour S, Pico de Coaña Y, Demorentin XM, Melief J, Thimma M, Wolodarski M, Gomez-Cabrero D, Hansson J, Kiessling R, Tegner J. Rad Pour S, et al. Among authors: tegner j. J Immunother Cancer. 2021 May;9(5):e002171. doi: 10.1136/jitc-2020-002171. J Immunother Cancer. 2021. PMID: 33963011 Free PMC article.

7

Data-driven bioinformatics to disentangle cells within a tissue microenvironment.

Tegner JN, Gomez-Cabrero D. Tegner JN, et al. Trends Cell Biol. 2022 Jun;32(6):467-469. doi: 10.1016/j.tcb.2022.03.009. Epub 2022 Apr 13. Trends Cell Biol. 2022. PMID: 35430125 Free article.

8

ClustAll: An R package for patient stratification in complex diseases.

Ortega-Legarreta A, Palomino-Echeverria S, Huergo E, Lagani V, Kiani NA, Rautou PE, Picola NP, Tegner J, Gomez-Cabrero D. Ortega-Legarreta A, et al. Among authors: tegner j. PLoS Comput Biol. 2024 Dec 13;20(12):e1012656. doi: 10.1371/journal.pcbi.1012656. eCollection 2024 Dec. PLoS Comput Biol. 2024. PMID: 39671459 Free PMC article.

9

A comparative analysis of blastoid models through single-cell transcriptomics.

Balubaid A, Alsolami S, Kiani NA, Gomez-Cabrero D, Li M, Tegner J. Balubaid A, et al. Among authors: tegner j. iScience. 2024 Oct 11;27(11):111122. doi: 10.1016/j.isci.2024.111122. eCollection 2024 Nov 15. iScience. 2024. PMID: 39524369 Free PMC article.

10

Implementation of the CDC translational informatics platform--from genetic variants to the national Swedish Rheumatology Quality Register.

Abugessaisa I, Gomez-Cabrero D, Snir O, Lindblad S, Klareskog L, Malmström V, Tegnér J. Abugessaisa I, et al. Among authors: tegner j. J Transl Med. 2013 Apr 2;11:85. doi: 10.1186/1479-5876-11-85. J Transl Med. 2013. PMID: 23548156 Free PMC article.

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