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Page 1
Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals.
Fackelmann G, Manghi P, Carlino N, Heidrich V, Piccinno G, Ricci L, Piperni E, Arrè A, Bakker E, Creedon AC, Francis L, Capdevila Pujol J, Davies R, Wolf J, Bermingham KM, Berry SE, Spector TD, Asnicar F, Segata N. Fackelmann G, et al. Among authors: manghi p. Nat Microbiol. 2025 Jan;10(1):41-52. doi: 10.1038/s41564-024-01870-z. Epub 2025 Jan 6. Nat Microbiol. 2025. PMID: 39762435 Free PMC article.
The person-to-person transmission landscape of the gut and oral microbiomes.
Valles-Colomer M, Blanco-Míguez A, Manghi P, Asnicar F, Dubois L, Golzato D, Armanini F, Cumbo F, Huang KD, Manara S, Masetti G, Pinto F, Piperni E, Punčochář M, Ricci L, Zolfo M, Farrant O, Goncalves A, Selma-Royo M, Binetti AG, Becerra JE, Han B, Lusingu J, Amuasi J, Amoroso L, Visconti A, Steves CM, Falchi M, Filosi M, Tett A, Last A, Xu Q, Qin N, Qin H, May J, Eibach D, Corrias MV, Ponzoni M, Pasolli E, Spector TD, Domenici E, Collado MC, Segata N. Valles-Colomer M, et al. Among authors: manghi p. Nature. 2023 Feb;614(7946):125-135. doi: 10.1038/s41586-022-05620-1. Epub 2023 Jan 18. Nature. 2023. PMID: 36653448 Free PMC article.
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4.
Blanco-Míguez A, Beghini F, Cumbo F, McIver LJ, Thompson KN, Zolfo M, Manghi P, Dubois L, Huang KD, Thomas AM, Nickols WA, Piccinno G, Piperni E, Punčochář M, Valles-Colomer M, Tett A, Giordano F, Davies R, Wolf J, Berry SE, Spector TD, Franzosa EA, Pasolli E, Asnicar F, Huttenhower C, Segata N. Blanco-Míguez A, et al. Among authors: manghi p. Nat Biotechnol. 2023 Nov;41(11):1633-1644. doi: 10.1038/s41587-023-01688-w. Epub 2023 Feb 23. Nat Biotechnol. 2023. PMID: 36823356 Free PMC article.
Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries.
Piperni E, Nguyen LH, Manghi P, Kim H, Pasolli E, Andreu-Sánchez S, Arrè A, Bermingham KM, Blanco-Míguez A, Manara S, Valles-Colomer M, Bakker E, Busonero F, Davies R, Fiorillo E, Giordano F, Hadjigeorgiou G, Leeming ER, Lobina M, Masala M, Maschio A, McIver LJ, Pala M, Pitzalis M, Wolf J, Fu J, Zhernakova A, Cacciò SM, Cucca F, Berry SE, Ercolini D, Chan AT, Huttenhower C, Spector TD, Segata N, Asnicar F. Piperni E, et al. Among authors: manghi p. Cell. 2024 Aug 22;187(17):4554-4570.e18. doi: 10.1016/j.cell.2024.06.018. Epub 2024 Jul 8. Cell. 2024. PMID: 38981480 Free article.
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts.
Manghi P, Bhosle A, Wang K, Marconi R, Selma-Royo M, Ricci L, Asnicar F, Golzato D, Ma W, Hang D, Thompson KN, Franzosa EA, Nabinejad A, Tamburini S, Rimm EB, Garrett WS, Sun Q, Chan AT, Valles-Colomer M, Arumugam M, Bermingham KM, Giordano F, Davies R, Hadjigeorgiou G, Wolf J, Strowig T, Berry SE, Huttenhower C, Spector TD, Segata N, Song M. Manghi P, et al. Nat Microbiol. 2024 Dec;9(12):3120-3134. doi: 10.1038/s41564-024-01858-9. Epub 2024 Nov 18. Nat Microbiol. 2024. PMID: 39558133 Free PMC article.
Detecting contamination in viromes using ViromeQC.
Zolfo M, Pinto F, Asnicar F, Manghi P, Tett A, Bushman FD, Segata N. Zolfo M, et al. Among authors: manghi p. Nat Biotechnol. 2019 Dec;37(12):1408-1412. doi: 10.1038/s41587-019-0334-5. Nat Biotechnol. 2019. PMID: 31748692 No abstract available.
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma.
Lee KA, Thomas AM, Bolte LA, Björk JR, de Ruijter LK, Armanini F, Asnicar F, Blanco-Miguez A, Board R, Calbet-Llopart N, Derosa L, Dhomen N, Brooks K, Harland M, Harries M, Leeming ER, Lorigan P, Manghi P, Marais R, Newton-Bishop J, Nezi L, Pinto F, Potrony M, Puig S, Serra-Bellver P, Shaw HM, Tamburini S, Valpione S, Vijay A, Waldron L, Zitvogel L, Zolfo M, de Vries EGE, Nathan P, Fehrmann RSN, Bataille V, Hospers GAP, Spector TD, Weersma RK, Segata N. Lee KA, et al. Among authors: manghi p. Nat Med. 2022 Mar;28(3):535-544. doi: 10.1038/s41591-022-01695-5. Epub 2022 Feb 28. Nat Med. 2022. PMID: 35228751 Free PMC article.
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases.
Ianiro G, Punčochář M, Karcher N, Porcari S, Armanini F, Asnicar F, Beghini F, Blanco-Míguez A, Cumbo F, Manghi P, Pinto F, Masucci L, Quaranta G, De Giorgi S, Sciumè GD, Bibbò S, Del Chierico F, Putignani L, Sanguinetti M, Gasbarrini A, Valles-Colomer M, Cammarota G, Segata N. Ianiro G, et al. Among authors: manghi p. Nat Med. 2022 Sep;28(9):1913-1923. doi: 10.1038/s41591-022-01964-3. Epub 2022 Sep 15. Nat Med. 2022. PMID: 36109637 Free PMC article.
MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice.
Manghi P, Blanco-Míguez A, Manara S, NabiNejad A, Cumbo F, Beghini F, Armanini F, Golzato D, Huang KD, Thomas AM, Piccinno G, Punčochář M, Zolfo M, Lesker TR, Bredon M, Planchais J, Glodt J, Valles-Colomer M, Koren O, Pasolli E, Asnicar F, Strowig T, Sokol H, Segata N. Manghi P, et al. Cell Rep. 2023 May 30;42(5):112464. doi: 10.1016/j.celrep.2023.112464. Epub 2023 May 3. Cell Rep. 2023. PMID: 37141097 Free PMC article.
49 results