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Integrating genetic subtypes with PET scan monitoring to predict outcome in diffuse large B-cell lymphoma.
Mendeville MS, Janssen J, Los-de Vries GT, van Dijk E, Richter J, Nijland M, Roemer MGM, Stathi P, Hijmering NJ, Bladergroen R, Pelaz DA, Diepstra A, Eertink CJ, Burggraaff CN, Kim Y, Lugtenburg PJ, van den Berg A, Tzankov A, Dirnhofer S, Dührsen U, Hüttmann A, Klapper W, Zijlstra JM, Ylstra B, de Jong D. Mendeville MS, et al. Among authors: kim y. Nat Commun. 2025 Jan 2;16(1):109. doi: 10.1038/s41467-024-55614-y. Nat Commun. 2025. PMID: 39747123 Free PMC article.
Multi-scale spatial modeling of immune cell distributions enables survival prediction in primary central nervous system lymphoma.
Roemer MGM, van de Brug T, Bosch E, Berry D, Hijmering N, Stathi P, Weijers K, Doorduijn J, Bromberg J, van de Wiel M, Ylstra B, de Jong D, Kim Y. Roemer MGM, et al. Among authors: kim y. iScience. 2023 Jul 10;26(8):107331. doi: 10.1016/j.isci.2023.107331. eCollection 2023 Aug 18. iScience. 2023. PMID: 37539043 Free PMC article.
Prognostic Value of T-Cell Density in the Tumor Center and Outer Margins in Gastric Cancer.
Soeratram TTD, Biesma HD, Egthuijsen JMP, Meershoek-Klein Kranenbarg E, Hartgrink HH, van de Velde CJH, Mookhoek A, van Dijk E, Kim Y, Ylstra B, van Laarhoven HWM, van Grieken NCT. Soeratram TTD, et al. Among authors: kim y. Mod Pathol. 2023 Sep;36(9):100218. doi: 10.1016/j.modpat.2023.100218. Epub 2023 May 12. Mod Pathol. 2023. PMID: 37182582 Free article.
Characterizing steroid hormone receptor chromatin binding landscapes in male and female breast cancer.
Severson TM, Kim Y, Joosten SEP, Schuurman K, van der Groep P, Moelans CB, Ter Hoeve ND, Manson QF, Martens JW, van Deurzen CHM, Barbe E, Hedenfalk I, Bult P, Smit VTHBM, Linn SC, van Diest PJ, Wessels L, Zwart W. Severson TM, et al. Among authors: kim y. Nat Commun. 2018 Feb 2;9(1):482. doi: 10.1038/s41467-018-02856-2. Nat Commun. 2018. PMID: 29396493 Free PMC article.
Integrative epigenetic taxonomy of primary prostate cancer.
Stelloo S, Nevedomskaya E, Kim Y, Schuurman K, Valle-Encinas E, Lobo J, Krijgsman O, Peeper DS, Chang SL, Feng FY, Wessels LFA, Henrique R, Jerónimo C, Bergman AM, Zwart W. Stelloo S, et al. Among authors: kim y. Nat Commun. 2018 Nov 21;9(1):4900. doi: 10.1038/s41467-018-07270-2. Nat Commun. 2018. PMID: 30464211 Free PMC article.
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium; Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J. Menden MP, et al. Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2. Nat Commun. 2019. PMID: 31209238 Free PMC article.
Impact of classical and basal-like molecular subtypes on overall survival in resected pancreatic cancer in the SPACIOUS-2 multicentre study.
Suurmeijer JA, Soer EC, Dings MPG, Kim Y, Strijker M, Bonsing BA, Brosens LAA, Busch OR, Groen JV, Halfwerk JBG, Slooff RAE, van Laarhoven HWM, Molenaar IQ, Offerhaus GJA, Morreau J, van de Vijver MJ, Fariña Sarasqueta A, Verheij J, Besselink MG, Bijlsma MF, Dijk F; Dutch Pancreatic Cancer Group. Suurmeijer JA, et al. Among authors: kim y. Br J Surg. 2022 Oct 14;109(11):1150-1155. doi: 10.1093/bjs/znac272. Br J Surg. 2022. PMID: 35979597 Free PMC article.
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