Xue Y - Search Results

1

Deciphering single-cell 3D chromatin structure using scCTG.

Jiang R, Xue Y, Huang Y, Gao YQ. Jiang R, et al. Among authors: xue y. J Chem Phys. 2024 Dec 28;161(24):245101. doi: 10.1063/5.0241334. J Chem Phys. 2024. PMID: 39718150

2

Chromatin structure changes during various processes from a DNA sequence view.

Quan H, Yang Y, Liu S, Tian H, Xue Y, Gao YQ. Quan H, et al. Among authors: xue y. Curr Opin Struct Biol. 2020 Jun;62:1-8. doi: 10.1016/j.sbi.2019.10.010. Epub 2019 Nov 22. Curr Opin Struct Biol. 2020. PMID: 31765966 Review.

3

Computational characterization of domain-segregated 3D chromatin structure and segmented DNA methylation status in carcinogenesis.

Xue Y, Yang Y, Tian H, Quan H, Liu S, Zhang L, Yang L, Zhu H, Wu H, Gao YQ. Xue Y, et al. Mol Oncol. 2022 Feb;16(3):699-716. doi: 10.1002/1878-0261.13127. Epub 2021 Nov 9. Mol Oncol. 2022. PMID: 34708506 Free PMC article.

4

Diffusion-enhanced characterization of 3D chromatin structure reveals its linkage to gene regulatory networks and the interactome.

He Y, Xue Y, Wang J, Huang Y, Liu L, Huang Y, Gao YQ. He Y, et al. Among authors: xue y. Genome Res. 2023 Aug;33(8):1354-1368. doi: 10.1101/gr.277737.123. Epub 2023 Jul 25. Genome Res. 2023. PMID: 37491077 Free PMC article.

5

Steric repulsion introduced by loop constraints modulates the microphase separation of chromatins.

Wei J, Xue Y, Liu Y, Tian H, Shao Y, Gao YQ. Wei J, et al. Among authors: xue y. J Chem Phys. 2024 Feb 7;160(5):054904. doi: 10.1063/5.0189692. J Chem Phys. 2024. PMID: 38341710

6

Unraveling the key role of chromatin structure in cancer development through epigenetic landscape characterization of oral cancer.

Xue Y, Liu L, Zhang Y, He Y, Wang J, Ma Z, Li TJ, Zhang J, Huang Y, Gao YQ. Xue Y, et al. Mol Cancer. 2024 Sep 6;23(1):190. doi: 10.1186/s12943-024-02100-0. Mol Cancer. 2024. PMID: 39243015 Free PMC article.

7

Hierarchical dinucleotide distribution in genome along evolution and its effect on chromatin packing.

Cai Z, He Y, Liu S, Xue Y, Quan H, Zhang L, Gao YQ. Cai Z, et al. Among authors: xue y. Life Sci Alliance. 2021 Jun 24;4(8):e202101028. doi: 10.26508/lsa.202101028. Print 2021 Aug. Life Sci Alliance. 2021. PMID: 34168075 Free PMC article.

8

Progressive Domain Segregation in Early Embryonic Development and Underlying Correlation to Genetic and Epigenetic Changes.

Quan H, Tian H, Liu S, Xue Y, Zhang Y, Xie W, Gao YQ. Quan H, et al. Among authors: xue y. Cells. 2021 Sep 23;10(10):2521. doi: 10.3390/cells10102521. Cells. 2021. PMID: 34685501 Free PMC article.

9

Multi-scale gene regulation mechanism: Spatiotemporal transmission of genetic information.

Xue Y, Wang J, He Y, Patra P, Gao YQ. Xue Y, et al. Curr Opin Struct Biol. 2022 Dec;77:102487. doi: 10.1016/j.sbi.2022.102487. Epub 2022 Oct 20. Curr Opin Struct Biol. 2022. PMID: 36274420 Review.

10

Characterization of network hierarchy reflects cell state specificity in genome organization.

Wang J, Xue Y, He Y, Quan H, Zhang J, Gao YQ. Wang J, et al. Among authors: xue y. Genome Res. 2023 Feb;33(2):247-260. doi: 10.1101/gr.277206.122. Epub 2023 Feb 24. Genome Res. 2023. PMID: 36828586 Free PMC article.

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