Yang JYH - Search Results

1

Scope+: An open source generalizable architecture for single-cell RNA-seq atlases at sample and cell levels.

Yin D, Cao Y, Chen J, Mak CLY, Yu KHO, Zhang J, Li J, Lin Y, Ho JWK, Yang JYH. Yin D, et al. Among authors: yang jyh. Bioinformatics. 2024 Dec 20:btae727. doi: 10.1093/bioinformatics/btae727. Online ahead of print. Bioinformatics. 2024. PMID: 39705183

2

scDC: single cell differential composition analysis.

Cao Y, Lin Y, Ormerod JT, Yang P, Yang JYH, Lo KK. Cao Y, et al. Among authors: yang jyh, yang p. BMC Bioinformatics. 2019 Dec 24;20(Suppl 19):721. doi: 10.1186/s12859-019-3211-9. BMC Bioinformatics. 2019. PMID: 31870280 Free PMC article.

3

Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data.

Cao Y, Ghazanfar S, Yang P, Yang J. Cao Y, et al. Brief Bioinform. 2023 May 19;24(3):bbad159. doi: 10.1093/bib/bbad159. Brief Bioinform. 2023. PMID: 37096588 Free PMC article.

4

Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2.

Lin Y, Cao Y, Willie E, Patrick E, Yang JYH. Lin Y, et al. Among authors: yang jyh. Nat Commun. 2023 Jul 17;14(1):4272. doi: 10.1038/s41467-023-39923-2. Nat Commun. 2023. PMID: 37460600 Free PMC article.

5

IMPACT: interpretable microbial phenotype analysis via microbial characteristic traits.

Mechtersheimer D, Ding W, Xu X, Kim S, Sue C, Cao Y, Yang J. Mechtersheimer D, et al. Bioinformatics. 2024 Dec 26;41(1):btae702. doi: 10.1093/bioinformatics/btae702. Bioinformatics. 2024. PMID: 39658259 Free PMC article.

6

scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning.

Lin Y, Wu TY, Wan S, Yang JYH, Wong WH, Wang YXR. Lin Y, et al. Among authors: yang jyh. Nat Biotechnol. 2022 May;40(5):703-710. doi: 10.1038/s41587-021-01161-6. Epub 2022 Jan 20. Nat Biotechnol. 2022. PMID: 35058621 Free PMC article.

7

Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data.

Yu L, Cao Y, Yang JYH, Yang P. Yu L, et al. Among authors: yang jyh, yang p. Genome Biol. 2022 Feb 8;23(1):49. doi: 10.1186/s13059-022-02622-0. Genome Biol. 2022. PMID: 35135612 Free PMC article.

8

3D reconstruction of spatial expression.

Lin Y, Yang JYH. Lin Y, et al. Among authors: yang jyh. Nat Methods. 2022 May;19(5):526-527. doi: 10.1038/s41592-022-01476-5. Nat Methods. 2022. PMID: 35577956 No abstract available.

9

Thinking process templates for constructing data stories with SCDNEY.

Cao Y, Tran A, Kim H, Robertson N, Lin Y, Torkel M, Yang P, Patrick E, Ghazanfar S, Yang J. Cao Y, et al. F1000Res. 2023 Dec 15;12:261. doi: 10.12688/f1000research.130623.1. eCollection 2023. F1000Res. 2023. PMID: 38434622 Free PMC article.

10

Pcdh19 mediates olfactory sensory neuron coalescence during postnatal stages and regeneration.

Martinez AP, Chung AC, Huang S, Bisogni AJ, Lin Y, Cao Y, Williams EO, Kim JY, Yang JYH, Lin DM. Martinez AP, et al. Among authors: yang jyh. iScience. 2023 Oct 16;26(11):108220. doi: 10.1016/j.isci.2023.108220. eCollection 2023 Nov 17. iScience. 2023. PMID: 37965156 Free PMC article.

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