Zheng R - Search Results

1

scMoMtF: An interpretable multitask learning framework for single-cell multi-omics data analysis.

Lan W, Ling T, Chen Q, Zheng R, Li M, Pan Y. Lan W, et al. Among authors: zheng r. PLoS Comput Biol. 2024 Dec 18;20(12):e1012679. doi: 10.1371/journal.pcbi.1012679. eCollection 2024 Dec. PLoS Comput Biol. 2024. PMID: 39693287 Free PMC article.

2

scMLC: an accurate and robust multiplex community detection method for single-cell multi-omics data.

Chen Y, Zheng R, Liu J, Li M. Chen Y, et al. Among authors: zheng r. Brief Bioinform. 2024 Jan 22;25(2):bbae101. doi: 10.1093/bib/bbae101. Brief Bioinform. 2024. PMID: 38493339 Free PMC article.

3

SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation.

Zheng R, Li M, Liang Z, Wu FX, Pan Y, Wang J. Zheng R, et al. Bioinformatics. 2019 Oct 1;35(19):3642-3650. doi: 10.1093/bioinformatics/btz139. Bioinformatics. 2019. PMID: 30821315

4

Identifying Interactions Between Kinases and Substrates Based on Protein-Protein Interaction Network.

Chen Q, Deng C, Lan W, Liu Z, Zheng R, Liu J, Wang J. Chen Q, et al. Among authors: zheng r. J Comput Biol. 2019 Aug;26(8):836-845. doi: 10.1089/cmb.2019.0048. Epub 2019 Apr 16. J Comput Biol. 2019. PMID: 30990327

5

KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network.

Lan W, Dong Y, Chen Q, Zheng R, Liu J, Pan Y, Chen YP. Lan W, et al. Among authors: zheng r. Brief Bioinform. 2022 Jan 17;23(1):bbab494. doi: 10.1093/bib/bbab494. Brief Bioinform. 2022. PMID: 34864877

6

A deep matrix factorization based approach for single-cell RNA-seq data clustering.

Liang Z, Zheng R, Chen S, Yan X, Li M. Liang Z, et al. Among authors: zheng r. Methods. 2022 Sep;205:114-122. doi: 10.1016/j.ymeth.2022.06.010. Epub 2022 Jun 28. Methods. 2022. PMID: 35777719

7

GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets.

Yan X, Zheng R, Li M. Yan X, et al. Among authors: zheng r. Brief Bioinform. 2022 Sep 20;23(5):bbac311. doi: 10.1093/bib/bbac311. Brief Bioinform. 2022. PMID: 35901449

8

Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data.

Chen S, Yan X, Zheng R, Li M. Chen S, et al. Among authors: zheng r. Brief Bioinform. 2023 Jan 19;24(1):bbac580. doi: 10.1093/bib/bbac580. Brief Bioinform. 2023. PMID: 36567258

9

CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity.

Yan X, Zheng R, Wu F, Li M. Yan X, et al. Among authors: zheng r. Bioinformatics. 2023 Mar 1;39(3):btad099. doi: 10.1093/bioinformatics/btad099. Bioinformatics. 2023. PMID: 36821425 Free PMC article.

10

Inferring single-cell gene regulatory network by non-redundant mutual information.

Zeng Y, He Y, Zheng R, Li M. Zeng Y, et al. Among authors: zheng r. Brief Bioinform. 2023 Sep 20;24(5):bbad326. doi: 10.1093/bib/bbad326. Brief Bioinform. 2023. PMID: 37715282

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