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Page 1
Plasticity of Human Microglia and Brain Perivascular Macrophages in Aging and Alzheimer's Disease.
Lee D, Vicari JM, Porras C, Spencer C, Pjanic M, Wang X, Kinrot S, Weiler P, Kosoy R, Bendl J, Prashant NM, Psychogyiou K, Malakates P, Hennigan E, Monteiro Fortes J, Zheng S, Therrien K, Mathur D, Kleopoulos SP, Shao Z, Argyriou S, Alvia M, Casey C, Hong A, Beaumont KG, Sebra R, Kellner CP, Bennett DA, Yuan GC, Voloudakis G, Theis FJ, Haroutunian V, Hoffman GE, Fullard JF, Roussos P. Lee D, et al. Among authors: theis fj. medRxiv [Preprint]. 2024 Dec 5:2023.10.25.23297558. doi: 10.1101/2023.10.25.23297558. medRxiv. 2024. PMID: 39677435 Free PMC article. Preprint.
Determinants of SARS-CoV-2 receptor gene expression in upper and lower airways.
Aliee H, Massip F, Qi C, de Biase MS, van Nijnatten J, Kersten ETG, Kermani NZ, Khuder B, Vonk JM, Vermeulen RCH; U-BIOPRED study group; Cambridge Lung Cancer Early Detection Programme; INER-Ciencias Mexican Lung Program; NHLBI LungMAP Consortium; Neighbors M, Tew GW, Grimbaldeston M, Ten Hacken NHT, Hu S, Guo Y, Zhang X, Sun K, Hiemstra PS, Ponder BA, Mäkelä MJ, Malmström K, Rintoul RC, Reyfman PA, Theis FJ, Brandsma CA, Adcock IM, Timens W, Xu CJ, van den Berge M, Schwarz RF, Koppelman GH, Nawijn MC, Faiz A. Aliee H, et al. Among authors: theis fj. medRxiv [Preprint]. 2020 Sep 2:2020.08.31.20169946. doi: 10.1101/2020.08.31.20169946. medRxiv. 2020. Update in: Allergy. 2022 Feb;77(2):690-694. doi: 10.1111/all.15152 PMID: 32909007 Free PMC article. Updated. Preprint.
The scverse project provides a computational ecosystem for single-cell omics data analysis.
Virshup I, Bredikhin D, Heumos L, Palla G, Sturm G, Gayoso A, Kats I, Koutrouli M; Scverse Community; Berger B, Pe'er D, Regev A, Teichmann SA, Finotello F, Wolf FA, Yosef N, Stegle O, Theis FJ. Virshup I, et al. Among authors: theis fj. Nat Biotechnol. 2023 May;41(5):604-606. doi: 10.1038/s41587-023-01733-8. Nat Biotechnol. 2023. PMID: 37037904 No abstract available.
Mapping cells through time and space with moscot.
Klein D, Palla G, Lange M, Klein M, Piran Z, Gander M, Meng-Papaxanthos L, Sterr M, Saber L, Jing C, Bastidas-Ponce A, Cota P, Tarquis-Medina M, Parikh S, Gold I, Lickert H, Bakhti M, Nitzan M, Cuturi M, Theis FJ. Klein D, et al. Among authors: theis fj. Nature. 2025 Jan 22. doi: 10.1038/s41586-024-08453-2. Online ahead of print. Nature. 2025. PMID: 39843746
Considerations for building and using integrated single-cell atlases.
Hrovatin K, Sikkema L, Shitov VA, Heimberg G, Shulman M, Oliver AJ, Mueller MF, Ibarra IL, Wang H, Ramírez-Suástegui C, He P, Schaar AC, Teichmann SA, Theis FJ, Luecken MD. Hrovatin K, et al. Among authors: theis fj. Nat Methods. 2025 Jan;22(1):41-57. doi: 10.1038/s41592-024-02532-y. Epub 2024 Dec 13. Nat Methods. 2025. PMID: 39672979 Review.
Publisher Correction: An integrated transcriptomic cell atlas of human neural organoids.
He Z, Dony L, Fleck JS, Szałata A, Li KX, Slišković I, Lin HC, Santel M, Atamian A, Quadrato G, Sun J, Pașca SP; Human Cell Atlas Organoid Biological Network; Camp JG, Theis FJ, Treutlein B. He Z, et al. Among authors: theis fj. Nature. 2025 Jan;637(8045):E21. doi: 10.1038/s41586-024-08482-x. Nature. 2025. PMID: 39663459 Free PMC article. No abstract available.
Heterogeneity-driven phenotypic plasticity and treatment response in branched-organoid models of pancreatic ductal adenocarcinoma.
Papargyriou A, Najajreh M, Cook DP, Maurer CH, Bärthel S, Messal HA, Ravichandran SK, Richter T, Knolle M, Metzler T, Shastri AR, Öllinger R, Jasper J, Schmidleitner L, Wang S, Schneeweis C, Ishikawa-Ankerhold H, Engleitner T, Mataite L, Semina M, Trabulssi H, Lange S, Ravichandra A, Schuster M, Mueller S, Peschke K, Schäfer A, Dobiasch S, Combs SE, Schmid RM, Bausch AR, Braren R, Heid I, Scheel CH, Schneider G, Zeigerer A, Luecken MD, Steiger K, Kaissis G, van Rheenen J, Theis FJ, Saur D, Rad R, Reichert M. Papargyriou A, et al. Among authors: theis fj. Nat Biomed Eng. 2024 Dec 10. doi: 10.1038/s41551-024-01273-9. Online ahead of print. Nat Biomed Eng. 2024. PMID: 39658630
351 results