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Correction for Brennan et al., "Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution".
Brennan C, Salido RA, Belda-Ferre P, Bryant M, Cowart C, Tiu MD, Gonzalez A, McDonald D, Tribelhorn C, Zarrinpar A, Knight R. Brennan C, et al. Among authors: bryant m. mSystems. 2024 Dec 13:e0128824. doi: 10.1128/msystems.01288-24. Online ahead of print. mSystems. 2024. PMID: 39670765 Free article. No abstract available.
Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies.
Brennan C, Belda-Ferre P, Zuffa S, Charron-Lamoureux V, Mohanty I, Ackermann G, Allaband C, Ambre M, Boyer T, Bryant M, Cantrell K, Gonzalez A, McDonald D, Salido RA, Song SJ, Wright G, Dorrestein PC, Knight R. Brennan C, et al. Among authors: bryant m. mSystems. 2024 Oct 22;9(10):e0098524. doi: 10.1128/msystems.00985-24. Epub 2024 Sep 16. mSystems. 2024. PMID: 39283083 Free PMC article.
Pangenome comparison of Bacteroides fragilis genomospecies unveils genetic diversity and ecological insights.
Oles RE, Carrillo Terrazas M, Loomis LR, Hsu C-Y, Tribelhorn C, Belda-Ferre P, Ea AC, Bryant M, Young JA, Carrow HC, Sandborn WJ, Dulai PS, Sivagnanam M, Pride D, Knight R, Chu H. Oles RE, et al. Among authors: bryant m. mSystems. 2024 Jul 23;9(7):e0051624. doi: 10.1128/msystems.00516-24. Epub 2024 Jun 27. mSystems. 2024. PMID: 38934546 Free PMC article.
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. Shaffer JP, et al. Among authors: bryant m. Biotechniques. 2021 Mar;70(3):149-159. doi: 10.2144/btn-2020-0153. Epub 2021 Jan 29. Biotechniques. 2021. PMID: 33512248 Free PMC article.
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. Shaffer JP, et al. Among authors: bryant m. bioRxiv [Preprint]. 2020 Nov 14:2020.11.13.370387. doi: 10.1101/2020.11.13.370387. bioRxiv. 2020. Update in: Biotechniques. 2021 Mar;70(3):149-159. doi: 10.2144/btn-2020-0153 PMID: 33200135 Free PMC article. Updated. Preprint.
SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.
Cantú VJ, Salido RA, Huang S, Rahman G, Tsai R, Valentine H, Magallanes CG, Aigner S, Baer NA, Barber T, Belda-Ferre P, Betty M, Bryant M, Casas Maya M, Castro-Martínez A, Chacón M, Cheung W, Crescini ES, De Hoff P, Eisner E, Farmer S, Hakim A, Kohn L, Lastrella AL, Lawrence ES, Morgan SC, Ngo TT, Nouri A, Plascencia A, Ruiz CA, Sathe S, Seaver P, Shwartz T, Smoot EW, Ostrander RT, Valles T, Yeo GW, Laurent LC, Fielding-Miller R, Knight R. Cantú VJ, et al. Among authors: bryant m. mSystems. 2022 Jun 28;7(3):e0141121. doi: 10.1128/msystems.01411-21. Epub 2022 May 16. mSystems. 2022. PMID: 35575492 Free PMC article.
Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV.
Taylor BC, Weldon KC, Ellis RJ, Franklin D, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Iudicello J, Heaton R, Grant I, Gianella S, Letendre S, Swafford A, Dorrestein PC, Knight R. Taylor BC, et al. Among authors: bryant m. mSystems. 2020 Oct 13;5(5):e00528-20. doi: 10.1128/mSystems.00528-20. mSystems. 2020. PMID: 33051377 Free PMC article.
Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.
Taylor BC, Weldon KC, Ellis RJ, Franklin D, Groth T, Gentry EC, Tripathi A, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Oliveira MF, Heaton R, Grant I, Gianella S, Letendre S, Swafford A, Dorrestein PC, Knight R. Taylor BC, et al. Among authors: bryant m. mSystems. 2020 Sep 29;5(5):e00465-20. doi: 10.1128/mSystems.00465-20. mSystems. 2020. PMID: 32994287 Free PMC article.
1,084 results