Mondal J - Search Results

1

Protein translation can fluidize bacterial cytoplasm.

Bera P, Wasim A, Bakshi S, Mondal J. Bera P, et al. Among authors: mondal j. PNAS Nexus. 2024 Nov 22;3(12):pgae532. doi: 10.1093/pnasnexus/pgae532. eCollection 2024 Dec. PNAS Nexus. 2024. PMID: 39660062 Free PMC article.

2

Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes.

Bakshi S, Choi H, Mondal J, Weisshaar JC. Bakshi S, et al. Among authors: mondal j. Mol Microbiol. 2014 Nov;94(4):871-87. doi: 10.1111/mmi.12805. Epub 2014 Oct 22. Mol Microbiol. 2014. PMID: 25250841 Free PMC article.

3

A Hi-C data-integrated model elucidates E. coli chromosome's multiscale organization at various replication stages.

Wasim A, Gupta A, Mondal J. Wasim A, et al. Among authors: mondal j. Nucleic Acids Res. 2021 Apr 6;49(6):3077-3091. doi: 10.1093/nar/gkab094. Nucleic Acids Res. 2021. PMID: 33660781 Free PMC article.

4

Mechanistic underpinning of cell aspect ratio-dependent emergent collective motions in swarming bacteria.

Bera P , Wasim A , Mondal J , Ghosh P . Bera P , et al. Among authors: mondal j. Soft Matter. 2021 Aug 21;17(31):7322-7331. doi: 10.1039/d1sm00311a. Epub 2021 Jul 21. Soft Matter. 2021. PMID: 34286783

5

Hi-C embedded polymer model of Escherichia coli reveals the origin of heterogeneous subdiffusion in chromosomal loci.

Bera P, Wasim A, Mondal J. Bera P, et al. Among authors: mondal j. Phys Rev E. 2022 Jun;105(6-1):064402. doi: 10.1103/PhysRevE.105.064402. Phys Rev E. 2022. PMID: 35854496

6

Development of a Data-Driven Integrative Model of a Bacterial Chromosome.

Wasim A, Bera P, Mondal J. Wasim A, et al. Among authors: mondal j. J Chem Theory Comput. 2024 Feb 27;20(4):1673-1688. doi: 10.1021/acs.jctc.3c00118. Epub 2023 Apr 21. J Chem Theory Comput. 2024. PMID: 37083406

7

Elucidation of Spatial Positioning of Ribosomes around Chromosome in Escherichia coli Cytoplasm via a Data-Informed Polymer-Based Model.

Wasim A, Bera P, Mondal J. Wasim A, et al. Among authors: mondal j. J Phys Chem B. 2024 Apr 11;128(14):3368-3382. doi: 10.1021/acs.jpcb.4c01210. Epub 2024 Apr 1. J Phys Chem B. 2024. PMID: 38560890

8

Modulation of α-synuclein aggregation amid diverse environmental perturbation.

Wasim A, Menon S, Mondal J. Wasim A, et al. Among authors: mondal j. Elife. 2024 Aug 1;13:RP95180. doi: 10.7554/eLife.95180. Elife. 2024. PMID: 39087984 Free PMC article.

9

Machine learning unravels inherent structural patterns in Escherichia coli Hi-C matrices and predicts chromosome dynamics.

Bera P, Mondal J. Bera P, et al. Among authors: mondal j. Nucleic Acids Res. 2024 Oct 14;52(18):10836-10849. doi: 10.1093/nar/gkae749. Nucleic Acids Res. 2024. PMID: 39217471 Free PMC article.

10

Impact of Inert Crowders on Host-Guest Recognition Process.

Majumdar BB, Mondal J. Majumdar BB, et al. Among authors: mondal j. J Phys Chem B. 2022 Jun 2. doi: 10.1021/acs.jpcb.2c01539. Online ahead of print. J Phys Chem B. 2022. PMID: 35654414

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