Kirkegaard JB - Search Results

1

Spontaneous breaking of symmetry in overlapping cell instance segmentation using diffusion models.

Kirkegaard JB. Kirkegaard JB. Biol Methods Protoc. 2024 Nov 9;9(1):bpae084. doi: 10.1093/biomethods/bpae084. eCollection 2024. Biol Methods Protoc. 2024. PMID: 39659670 Free PMC article.

2

Fast detection of slender bodies in high density microscopy data.

Alonso A, Kirkegaard JB. Alonso A, et al. Among authors: kirkegaard jb. Commun Biol. 2023 Jul 19;6(1):754. doi: 10.1038/s42003-023-05098-1. Commun Biol. 2023. PMID: 37468539 Free PMC article.

3

Learning optimal integration of spatial and temporal information in noisy chemotaxis.

Alonso A, Kirkegaard JB. Alonso A, et al. Among authors: kirkegaard jb. PNAS Nexus. 2024 Jun 14;3(7):pgae235. doi: 10.1093/pnasnexus/pgae235. eCollection 2024 Jul. PNAS Nexus. 2024. PMID: 38952456 Free PMC article.

4

Optimal Transport Flows for Distributed Production Networks.

Kirkegaard JB, Sneppen K. Kirkegaard JB, et al. Phys Rev Lett. 2020 May 22;124(20):208101. doi: 10.1103/PhysRevLett.124.208101. Phys Rev Lett. 2020. PMID: 32501061

5

Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks.

Kirkegaard JB, Nielsen BF, Trusina A, Sneppen K. Kirkegaard JB, et al. J R Soc Interface. 2019 Oct 31;16(159):20190517. doi: 10.1098/rsif.2019.0517. Epub 2019 Oct 23. J R Soc Interface. 2019. PMID: 31640503 Free PMC article.

6

Superspreading quantified from bursty epidemic trajectories.

Kirkegaard JB, Sneppen K. Kirkegaard JB, et al. Sci Rep. 2021 Dec 16;11(1):24124. doi: 10.1038/s41598-021-03126-w. Sci Rep. 2021. PMID: 34916534 Free PMC article.

7

Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations.

Kirkegaard JB. Kirkegaard JB. BMC Bioinformatics. 2022 May 21;23(1):191. doi: 10.1186/s12859-022-04728-5. BMC Bioinformatics. 2022. PMID: 35597909 Free PMC article.

8

Cyclic-di-GMP signaling controls metabolic activity in Pseudomonas aeruginosa.

Lichtenberg M, Kragh KN, Fritz B, Kirkegaard JB, Tolker-Nielsen T, Bjarnsholt T. Lichtenberg M, et al. Among authors: kirkegaard jb. Cell Rep. 2022 Oct 18;41(3):111515. doi: 10.1016/j.celrep.2022.111515. Cell Rep. 2022. PMID: 36260996 Free article.

9

Transcriptomic fingerprint of bacterial infection in lower extremity ulcers.

Fritz BG, Kirkegaard JB, Nielsen CH, Kirketerp-Møller K, Malone M, Bjarnsholt T. Fritz BG, et al. Among authors: kirkegaard jb. APMIS. 2022 Aug;130(8):524-534. doi: 10.1111/apm.13234. Epub 2022 Jun 2. APMIS. 2022. PMID: 35567538 Free PMC article.

10

Superspreading of airborne pathogens in a heterogeneous world.

Kirkegaard JB, Mathiesen J, Sneppen K. Kirkegaard JB, et al. Sci Rep. 2021 May 27;11(1):11191. doi: 10.1038/s41598-021-90666-w. Sci Rep. 2021. PMID: 34045593 Free PMC article.

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