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Page 1
MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.
Zdouc MM, Blin K, Louwen NLL, Navarro J, Loureiro C, Bader CD, Bailey CB, Barra L, Booth TJ, Bozhüyük KAJ, Cediel-Becerra JDD, Charlop-Powers Z, Chevrette MG, Chooi YH, D'Agostino PM, de Rond T, Del Pup E, Duncan KR, Gu W, Hanif N, Helfrich EJN, Jenner M, Katsuyama Y, Korenskaia A, Krug D, Libis V, Lund GA, Mantri S, Morgan KD, Owen C, Phan CS, Philmus B, Reitz ZL, Robinson SL, Singh KS, Teufel R, Tong Y, Tugizimana F, Ulanova D, Winter JM, Aguilar C, Akiyama DY, Al-Salihi SAA, Alanjary M, Alberti F, Aleti G, Alharthi SA, Rojo MYA, Arishi AA, Augustijn HE, Avalon NE, Avelar-Rivas JA, Axt KK, Barbieri HB, Barbosa JCJ, Barboza Segato LG, Barrett SE, Baunach M, Beemelmanns C, Beqaj D, Berger T, Bernaldo-Agüero J, Bettenbühl SM, Bielinski VA, Biermann F, Borges RM, Borriss R, Breitenbach M, Bretscher KM, Brigham MW, Buedenbender L, Bulcock BW, Cano-Prieto C, Capela J, Carrion VJ, Carter RS, Castelo-Branco R, Castro-Falcón G, Chagas FO, Charria-Girón E, Chaudhri AA, Chaudhry V, Choi H, Choi Y, Choupannejad R, Chromy J, Donahey MSC, Collemare J, Connolly JA, Creamer KE, Crüsemann M, Cruz AA, Cumsille A, Dallery JF, Damas-Ramos LC, Damiani T, de Kruijff M, Martín BD, Sala GD, Dill… See abstract for full author list ➔ Zdouc MM, et al. Among authors: avelar rivas ja. Nucleic Acids Res. 2024 Dec 9:gkae1115. doi: 10.1093/nar/gkae1115. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39657789
Yeast diversity in open agave fermentations across Mexico.
Gallegos-Casillas P, García-Ortega LF, Espinosa-Cantú A, Avelar-Rivas JA, Torres-Lagunes CG, Cano-Ricardez A, García-Acero ÁM, Ruiz-Castro S, Flores-Barraza M, Castillo A, González-Zozaya F, Delgado-Lemus A, Molina-Freaner F, Jacques-Hernández C, Hernández-López A, Delaye L, Aguirre-Dugua X, Kirchmayr MR, Morales L, Mancera E, DeLuna A. Gallegos-Casillas P, et al. Among authors: avelar rivas ja. Yeast. 2024 Jan;41(1-2):35-51. doi: 10.1002/yea.3913. Epub 2023 Dec 6. Yeast. 2024. PMID: 38054508
Systematic profiling of subtelomeric silencing factors in budding yeast.
Juárez-Reyes A, Avelar-Rivas JA, Hernandez-Valdes JA, Hua B, Campos SE, González J, González A, Springer M, Mancera E, DeLuna A. Juárez-Reyes A, et al. Among authors: avelar rivas ja. G3 (Bethesda). 2023 Sep 30;13(10):jkad153. doi: 10.1093/g3journal/jkad153. G3 (Bethesda). 2023. PMID: 37431950 Free PMC article.
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
Terlouw BR, Blin K, Navarro-Muñoz JC, Avalon NE, Chevrette MG, Egbert S, Lee S, Meijer D, Recchia MJJ, Reitz ZL, van Santen JA, Selem-Mojica N, Tørring T, Zaroubi L, Alanjary M, Aleti G, Aguilar C, Al-Salihi SAA, Augustijn HE, Avelar-Rivas JA, Avitia-Domínguez LA, Barona-Gómez F, Bernaldo-Agüero J, Bielinski VA, Biermann F, Booth TJ, Carrion Bravo VJ, Castelo-Branco R, Chagas FO, Cruz-Morales P, Du C, Duncan KR, Gavriilidou A, Gayrard D, Gutiérrez-García K, Haslinger K, Helfrich EJN, van der Hooft JJJ, Jati AP, Kalkreuter E, Kalyvas N, Kang KB, Kautsar S, Kim W, Kunjapur AM, Li YX, Lin GM, Loureiro C, Louwen JJR, Louwen NLL, Lund G, Parra J, Philmus B, Pourmohsenin B, Pronk LJU, Rego A, Rex DAB, Robinson S, Rosas-Becerra LR, Roxborough ET, Schorn MA, Scobie DJ, Singh KS, Sokolova N, Tang X, Udwary D, Vigneshwari A, Vind K, Vromans SPJM, Waschulin V, Williams SE, Winter JM, Witte TE, Xie H, Yang D, Yu J, Zdouc M, Zhong Z, Collemare J, Linington RG, Weber T, Medema MH. Terlouw BR, et al. Among authors: avelar rivas ja. Nucleic Acids Res. 2023 Jan 6;51(D1):D603-D610. doi: 10.1093/nar/gkac1049. Nucleic Acids Res. 2023. PMID: 36399496 Free PMC article.
Metagenomics Bioinformatic Pipeline.
Garfias-Gallegos D, Zirión-Martínez C, Bustos-Díaz ED, Arellano-Fernández TV, Lovaco-Flores JA, Espinosa-Jaime A, Avelar-Rivas JA, Sélem-Mójica N. Garfias-Gallegos D, et al. Among authors: avelar rivas ja. Methods Mol Biol. 2022;2512:153-179. doi: 10.1007/978-1-0716-2429-6_10. Methods Mol Biol. 2022. PMID: 35818005
Draft Genome Sequence of a Kazachstania humilis Strain Isolated from Agave Fermentation.
García-Ortega LF, Colón-González M, Sedeño I, Santiago-Garduño E, Avelar-Rivas JA, Kirchmayr MR, DeLuna A, Delaye L, Morales L, Mancera E. García-Ortega LF, et al. Among authors: avelar rivas ja. Microbiol Resour Announc. 2022 Mar 17;11(3):e0115421. doi: 10.1128/mra.01154-21. Epub 2022 Mar 2. Microbiol Resour Announc. 2022. PMID: 35234491 Free PMC article.
Rerouting carbon flux to enhance photosynthetic productivity.
Ducat DC, Avelar-Rivas JA, Way JC, Silver PA. Ducat DC, et al. Among authors: avelar rivas ja. Appl Environ Microbiol. 2012 Apr;78(8):2660-8. doi: 10.1128/AEM.07901-11. Epub 2012 Feb 3. Appl Environ Microbiol. 2012. PMID: 22307292 Free PMC article.