Ohkawa Y - Search Results

1

Transcription-coupled changes in genomic region proximities during transcriptional bursting.

Ohishi H, Shinkai S, Owada H, Fujii T, Hosoda K, Onami S, Yamamoto T, Ohkawa Y, Ochiai H. Ohishi H, et al. Among authors: ohkawa y. Sci Adv. 2024 Dec 6;10(49):eadn0020. doi: 10.1126/sciadv.adn0020. Epub 2024 Dec 6. Sci Adv. 2024. PMID: 39642226 Free PMC article.

2

Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.

Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T, Okamura T, Ohkawa Y, Kimura H, Nikaido I. Ochiai H, et al. Among authors: ohkawa y. Sci Adv. 2020 Jun 17;6(25):eaaz6699. doi: 10.1126/sciadv.aaz6699. eCollection 2020 Jun. Sci Adv. 2020. PMID: 32596448 Free PMC article.

3

STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity.

Ohishi H, Shimada S, Uchino S, Li J, Sato Y, Shintani M, Owada H, Ohkawa Y, Pertsinidis A, Yamamoto T, Kimura H, Ochiai H. Ohishi H, et al. Among authors: ohkawa y. Nat Commun. 2022 Dec 20;13(1):7672. doi: 10.1038/s41467-022-35286-2. Nat Commun. 2022. PMID: 36539402 Free PMC article.

4

Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states.

Tomimatsu K, Fujii T, Bise R, Hosoda K, Taniguchi Y, Ochiai H, Ohishi H, Ando K, Minami R, Tanaka K, Tachibana T, Mori S, Harada A, Maehara K, Nagasaki M, Uchida S, Kimura H, Narita M, Ohkawa Y. Tomimatsu K, et al. Among authors: ohkawa y. Nat Commun. 2024 May 8;15(1):3657. doi: 10.1038/s41467-024-47989-9. Nat Commun. 2024. PMID: 38719795 Free PMC article.

5

Discriminative feature of cells characterizes cell populations of interest by a small subset of genes.

Fujii T, Maehara K, Fujita M, Ohkawa Y. Fujii T, et al. Among authors: ohkawa y. PLoS Comput Biol. 2021 Nov 19;17(11):e1009579. doi: 10.1371/journal.pcbi.1009579. eCollection 2021 Nov. PLoS Comput Biol. 2021. PMID: 34797848 Free PMC article.

6

Genome-wide analysis of chromatin structure changes upon MyoD binding in proliferative myoblasts during the cell cycle.

Wu Q, Fujii T, Harada A, Tomimatsu K, Miyawaki-Kuwakado A, Fujita M, Maehara K, Ohkawa Y. Wu Q, et al. Among authors: ohkawa y. J Biochem. 2021 Sep 7;169(6):653-661. doi: 10.1093/jb/mvab001. J Biochem. 2021. PMID: 33479729

7

Transcriptome analysis of gene expression changes upon enzymatic dissociation in skeletal myoblasts.

Miyawaki-Kuwakado A, Wu Q, Harada A, Tomimatsu K, Fujii T, Maehara K, Ohkawa Y. Miyawaki-Kuwakado A, et al. Among authors: ohkawa y. Genes Cells. 2021 Jul;26(7):530-540. doi: 10.1111/gtc.12870. Epub 2021 Jun 8. Genes Cells. 2021. PMID: 33987903 Free article.

8

Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.

Nishimura M, Fujii T, Tanaka H, Maehara K, Morishima K, Shimizu M, Kobayashi Y, Nozawa K, Takizawa Y, Sugiyama M, Ohkawa Y, Kurumizaka H. Nishimura M, et al. Among authors: ohkawa y. Commun Biol. 2024 Jan 8;7(1):61. doi: 10.1038/s42003-023-05694-1. Commun Biol. 2024. PMID: 38191828 Free PMC article.

9

Defects in the H3t Gene Cause an Increase in Leydig Cells With Impaired Spermatogenesis in Mice.

Wu Q, Ito M, Fujii T, Tanaka K, Nakatani K, Izumi Y, Bamba T, Baba T, Maehara K, Tomimatsu K, Takemoto T, Ohkawa Y, Harada A. Wu Q, et al. Among authors: ohkawa y. Genes Cells. 2025 Jan;30(1):e13182. doi: 10.1111/gtc.13182. Epub 2024 Dec 3. Genes Cells. 2025. PMID: 39624989 Free PMC article.

10

Hoxa10 mediates positional memory to govern stem cell function in adult skeletal muscle.

Yoshioka K, Nagahisa H, Miura F, Araki H, Kamei Y, Kitajima Y, Seko D, Nogami J, Tsuchiya Y, Okazaki N, Yonekura A, Ohba S, Sumita Y, Chiba K, Ito K, Asahina I, Ogawa Y, Ito T, Ohkawa Y, Ono Y. Yoshioka K, et al. Among authors: ohkawa y. Sci Adv. 2021 Jun 9;7(24):eabd7924. doi: 10.1126/sciadv.abd7924. Print 2021 Jun. Sci Adv. 2021. PMID: 34108202 Free PMC article.

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