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Increased spatial coupling of integrin and collagen IV in the immunoresistant clear-cell renal-cell carcinoma tumor microenvironment.
Soupir AC, Hayes MT, Peak TC, Ospina O, Chakiryan NH, Berglund AE, Stewart PA, Nguyen J, Segura CM, Francis NL, Echevarria PMR, Chahoud J, Li R, Tsai KY, Balasi JA, Peres YC, Dhillon J, Martinez LA, Gloria WE, Schurman N, Kim S, Gregory M, Mulé J, Fridley BL, Manley BJ. Soupir AC, et al. Genome Biol. 2024 Dec 5;25(1):308. doi: 10.1186/s13059-024-03435-z. Genome Biol. 2024. PMID: 39639369 Free PMC article.
BatchFLEX: feature-level equalization of X-batch.
Davis JT, Obermayer AN, Soupir AC, Hesterberg RS, Duong T, Yang CY, Dao KP, Manley BJ, Grass GD, Avram D, Rodriguez PC, Fridley BL, Yu X, Teng M, Wang X, Shaw TI. Davis JT, et al. Among authors: soupir ac. Bioinformatics. 2024 Oct 1;40(10):btae587. doi: 10.1093/bioinformatics/btae587. Bioinformatics. 2024. PMID: 39360977 Free PMC article.
spatialGE: A user-friendly web application to democratize spatial transcriptomics analysis.
Ospina OE, Manjarres-Betancur R, Gonzalez-Calderon G, Soupir AC, Smalley I, Tsai K, Markowitz J, Vallebuona E, Berglund A, Eschrich S, Yu X, Fridley BL. Ospina OE, et al. Among authors: soupir ac. bioRxiv [Preprint]. 2024 Jul 2:2024.06.27.601050. doi: 10.1101/2024.06.27.601050. bioRxiv. 2024. Update in: Cancer Res. 2024 Dec 5. doi: 10.1158/0008-5472.CAN-24-2346 PMID: 39005315 Free PMC article. Updated. Preprint.
WITHDRAWN: Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer.
Soupir AC, Townsend MK, Hathaway CA, Nguyen J, Moran Segura C, Saeed-Vafa D, Ospina OE, Peres LC, Conejo-Garcia JR, Terry KL, Tworoger SS, Fridley BL. Soupir AC, et al. medRxiv [Preprint]. 2024 Feb 28:2024.01.16.24301371. doi: 10.1101/2024.01.16.24301371. medRxiv. 2024. PMID: 38293174 Free PMC article. Preprint.
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment.
Soupir AC, Hayes MT, Peak TC, Ospina O, Chakiryan NH, Berglund AE, Stewart PA, Nguyen J, Segura CM, Francis NL, Echevarria PMR, Chahoud J, Li R, Tsai KY, Balasi JA, Peres YC, Dhillon J, Martinez LA, Gloria WE, Schurman N, Kim S, Gregory M, Mulé J, Fridley BL, Manley BJ. Soupir AC, et al. bioRxiv [Preprint]. 2023 Nov 17:2023.11.16.567457. doi: 10.1101/2023.11.16.567457. bioRxiv. 2023. Update in: Genome Biol. 2024 Dec 5;25(1):308. doi: 10.1186/s13059-024-03435-z PMID: 38014063 Free PMC article. Updated. Preprint.
Novel Use of Circulating Tumor DNA to Identify Muscle-invasive and Non-organ-confined Upper Tract Urothelial Carcinoma.
Huelster HL, Gould B, Schiftan EA, Camperlengo L, Davaro F, Rose KM, Soupir AC, Jia S, Zheng T, Sexton WJ, Pow-Sang J, Spiess PE, Daniel Grass G, Wang L, Wang X, Vosoughi A, Necchi A, Meeks JJ, Faltas BM, Du P, Li R. Huelster HL, et al. Among authors: soupir ac. Eur Urol. 2024 Mar;85(3):283-292. doi: 10.1016/j.eururo.2023.09.017. Epub 2023 Oct 4. Eur Urol. 2024. PMID: 37802683
17 results