Capra JA - Search Results

1

Inferring human phenotypes using ancient DNA: from molecules to populations.

Ferrando-Bernal M, Brand CM, Capra JA. Ferrando-Bernal M, et al. Among authors: capra ja. Curr Opin Genet Dev. 2024 Nov 28;90:102283. doi: 10.1016/j.gde.2024.102283. Online ahead of print. Curr Opin Genet Dev. 2024. PMID: 39612613 Review.

2

Cell-Specific Transposable Element and Gene Expression Analysis Across Systemic Lupus Erythematosus Phenotypes.

Cutts Z, Patterson S, Maliskova L, Taylor KE, Ye CJ, Dall'Era M, Yazdany J, Criswell LA, Fragiadakis GK, Langelier C, Capra JA, Sirota M, Lanata CM. Cutts Z, et al. Among authors: capra ja. ACR Open Rheumatol. 2024 Nov;6(11):769-779. doi: 10.1002/acr2.11713. Epub 2024 Aug 14. ACR Open Rheumatol. 2024. PMID: 39143499 Free PMC article.

3

Haplotype editing with CRISPR/Cas9 as a therapeutic approach for dominant-negative missense mutations in NEFL.

Dua PH, Simon BMJ, Marley CBE, Feliciano CM, Watry HL, Steury D, Abraham A, Gilbertson EN, Ramey GD, Capra JA, Conklin BR, Judge LM. Dua PH, et al. Among authors: capra ja. bioRxiv [Preprint]. 2024 Dec 22:2024.12.20.629813. doi: 10.1101/2024.12.20.629813. bioRxiv. 2024. PMID: 39763989 Free PMC article. Preprint.

4

Methylation Clocks Do Not Predict Age or Alzheimer's Disease Risk Across Genetically Admixed Individuals.

Cruz-González S, Gu E, Gomez L, Mews M, Vance JM, Cuccaro ML, Cornejo-Olivas MR, Feliciano-Astacio BE, Byrd GS, Haines JL, Pericak-Vance MA, Griswold AJ, Bush WS, Capra JA. Cruz-González S, et al. Among authors: capra ja. bioRxiv [Preprint]. 2024 Oct 18:2024.10.16.618588. doi: 10.1101/2024.10.16.618588. bioRxiv. 2024. PMID: 39464059 Free PMC article. Preprint.

5

Machine Learning Reveals the Diversity of Human 3D Chromatin Contact Patterns.

Gilbertson EN, Brand CM, McArthur E, Rinker DC, Kuang S, Pollard KS, Capra JA. Gilbertson EN, et al. Among authors: capra ja. Mol Biol Evol. 2024 Oct 4;41(10):msae209. doi: 10.1093/molbev/msae209. Mol Biol Evol. 2024. PMID: 39404010 Free PMC article.

6

Sequence-Based Machine Learning Reveals 3D Genome Differences between Bonobos and Chimpanzees.

Brand CM, Kuang S, Gilbertson EN, McArthur E, Pollard KS, Webster TH, Capra JA. Brand CM, et al. Among authors: capra ja. Genome Biol Evol. 2024 Nov 1;16(11):evae210. doi: 10.1093/gbe/evae210. Genome Biol Evol. 2024. PMID: 39382451 Free PMC article.

7

Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale.

Hoang N, Sardaripour N, Ramey GD, Schilling K, Liao E, Chen Y, Park JH, Bledsoe X, Landman BA, Gamazon ER, Benton ML, Capra JA, Rubinov M. Hoang N, et al. Among authors: capra ja. PLoS Biol. 2024 Sep 13;22(9):e3002782. doi: 10.1371/journal.pbio.3002782. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39269986 Free PMC article.

8

VUStruct: a compute pipeline for high throughput and personalized structural biology.

Moth CW, Sheehan JH, Mamun AA, Sivley RM, Gulsevin A, Rinker D, Capra JA, Meiler J. Moth CW, et al. Among authors: capra ja. bioRxiv [Preprint]. 2024 Aug 7:2024.08.06.606224. doi: 10.1101/2024.08.06.606224. bioRxiv. 2024. PMID: 39149406 Free PMC article. Preprint.

9

Mapping kinase domain resistance mechanisms for the MET receptor tyrosine kinase via deep mutational scanning.

Estevam GO, Linossi EM, Rao J, Macdonald CB, Ravikumar A, Chrispens KM, Capra JA, Coyote-Maestas W, Pimentel H, Collisson EA, Jura N, Fraser JS. Estevam GO, et al. Among authors: capra ja. bioRxiv [Preprint]. 2024 Dec 5:2024.07.16.603579. doi: 10.1101/2024.07.16.603579. bioRxiv. 2024. PMID: 39071407 Free PMC article. Preprint.

10

High-throughput functional mapping of variants in an arrhythmia gene, KCNE1, reveals novel biology.

Muhammad A, Calandranis ME, Li B, Yang T, Blackwell DJ, Harvey ML, Smith JE, Daniel ZA, Chew AE, Capra JA, Matreyek KA, Fowler DM, Roden DM, Glazer AM. Muhammad A, et al. Among authors: capra ja. Genome Med. 2024 May 30;16(1):73. doi: 10.1186/s13073-024-01340-5. Genome Med. 2024. PMID: 38816749 Free PMC article.

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