Zhang M - Search Results

1

GPTrans: A Biological Language Model-Based Approach for Predicting Disease-Associated Mutations in G Protein-Coupled Receptors.

Wang X, Zhang M, Yang X, Yu DJ, Ge F. Wang X, et al. Among authors: zhang m. J Chem Inf Model. 2024 Dec 23;64(24):9626-9642. doi: 10.1021/acs.jcim.4c01999. Epub 2024 Nov 28. J Chem Inf Model. 2024. PMID: 39610143

2

Improving N(6)-methyladenosine site prediction with heuristic selection of nucleotide physical-chemical properties.

Zhang M, Sun JW, Liu Z, Ren MW, Shen HB, Yu DJ. Zhang M, et al. Anal Biochem. 2016 Sep 1;508:104-13. doi: 10.1016/j.ab.2016.06.001. Epub 2016 Jun 11. Anal Biochem. 2016. PMID: 27293216

3

Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs.

Hu J, Li Y, Zhang M, Yang X, Shen HB, Yu DJ. Hu J, et al. Among authors: zhang m. IEEE/ACM Trans Comput Biol Bioinform. 2017 Nov-Dec;14(6):1389-1398. doi: 10.1109/TCBB.2016.2616469. Epub 2016 Oct 11. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 27740495

4

Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble.

Zhang M, Xu Y, Li L, Liu Z, Yang X, Yu DJ. Zhang M, et al. Anal Biochem. 2018 Jun 1;550:41-48. doi: 10.1016/j.ab.2018.03.027. Epub 2018 Apr 9. Anal Biochem. 2018. PMID: 29649472

5

FCMSTrans: Accurate Prediction of Disease-Associated nsSNPs by Utilizing Multiscale Convolution and Deep Feature Combination within a Transformer Framework.

Zhang M, Gong C, Ge F, Yu DJ. Zhang M, et al. J Chem Inf Model. 2024 Feb 26;64(4):1394-1406. doi: 10.1021/acs.jcim.3c02025. Epub 2024 Feb 13. J Chem Inf Model. 2024. PMID: 38349747

6

MetalTrans: A Biological Language Model-Based Approach for Predicting Disease-Associated Mutations in Protein Metal-Binding Sites.

Zhang M, Wang X, Xu S, Ge F, Paixao IC, Song J, Yu DJ. Zhang M, et al. J Chem Inf Model. 2024 Aug 12;64(15):6216-6229. doi: 10.1021/acs.jcim.4c00739. Epub 2024 Aug 2. J Chem Inf Model. 2024. PMID: 39092854

7

DeepBP: Ensemble deep learning strategy for bioactive peptide prediction.

Zhang M, Zhou J, Wang X, Wang X, Ge F. Zhang M, et al. BMC Bioinformatics. 2024 Nov 11;25(1):352. doi: 10.1186/s12859-024-05974-5. BMC Bioinformatics. 2024. PMID: 39528950 Free PMC article.

8

PRITrans: A Transformer-Based Approach for the Prediction of the Effects of Missense Mutation on Protein-RNA Interactions.

Ge F, Li CF, Zhang CM, Zhang M, Yu DJ. Ge F, et al. Among authors: zhang m, zhang cm. Int J Mol Sci. 2024 Nov 17;25(22):12348. doi: 10.3390/ijms252212348. Int J Mol Sci. 2024. PMID: 39596413 Free PMC article.

9

TCellPredX: A Novel Approach for Accurate Prediction of Hepatitis C Virus Linear T Cell Epitopes.

Ge F, Li HY, Zhang M, Arif M, Alam T. Ge F, et al. Among authors: zhang m. ACS Omega. 2024 Dec 16;9(52):51494-51507. doi: 10.1021/acsomega.4c08715. eCollection 2024 Dec 31. ACS Omega. 2024. PMID: 39758636 Free PMC article.

10

scMGATGRN: a multiview graph attention network-based method for inferring gene regulatory networks from single-cell transcriptomic data.

Yuan L, Zhao L, Jiang Y, Shen Z, Zhang Q, Zhang M, Zheng CH, Huang DS. Yuan L, et al. Among authors: zhang m, zhang q. Brief Bioinform. 2024 Sep 23;25(6):bbae526. doi: 10.1093/bib/bbae526. Brief Bioinform. 2024. PMID: 39417321 Free PMC article.

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