Yang X - Search Results

1

GPTrans: A Biological Language Model-Based Approach for Predicting Disease-Associated Mutations in G Protein-Coupled Receptors.

Wang X, Zhang M, Yang X, Yu DJ, Ge F. Wang X, et al. Among authors: yang x. J Chem Inf Model. 2024 Dec 23;64(24):9626-9642. doi: 10.1021/acs.jcim.4c01999. Epub 2024 Nov 28. J Chem Inf Model. 2024. PMID: 39610143

2

Learning Protein Embedding to Improve Protein Fold Recognition Using Deep Metric Learning.

Zhu GY, Liu Y, Wang PH, Yang X, Yu DJ. Zhu GY, et al. Among authors: yang x. J Chem Inf Model. 2022 Sep 12;62(17):4283-4291. doi: 10.1021/acs.jcim.2c00959. Epub 2022 Aug 25. J Chem Inf Model. 2022. PMID: 36017565

3

GCmapCrys: Integrating graph attention network with predicted contact map for multi-stage protein crystallization propensity prediction.

Wang PH, Zhu YH, Yang X, Yu DJ. Wang PH, et al. Among authors: yang x. Anal Biochem. 2023 Feb 15;663:115020. doi: 10.1016/j.ab.2022.115020. Epub 2022 Dec 12. Anal Biochem. 2023. PMID: 36521558

4

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.

Yu DJ, Hu J, Yan H, Yang XB, Yang JY, Shen HB. Yu DJ, et al. BMC Bioinformatics. 2014 Sep 5;15(1):297. doi: 10.1186/1471-2105-15-297. BMC Bioinformatics. 2014. PMID: 25189131 Free PMC article.

5

A new supervised over-sampling algorithm with application to protein-nucleotide binding residue prediction.

Hu J, He X, Yu DJ, Yang XB, Yang JY, Shen HB. Hu J, et al. Among authors: yang jy, yang xb. PLoS One. 2014 Sep 17;9(9):e107676. doi: 10.1371/journal.pone.0107676. eCollection 2014. PLoS One. 2014. PMID: 25229688 Free PMC article.

6

Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble.

Zhang M, Xu Y, Li L, Liu Z, Yang X, Yu DJ. Zhang M, et al. Among authors: yang x. Anal Biochem. 2018 Jun 1;550:41-48. doi: 10.1016/j.ab.2018.03.027. Epub 2018 Apr 9. Anal Biochem. 2018. PMID: 29649472

7

Prediction of Multiple Types of RNA Modifications via Biological Language Model.

Zhang Y, Ge F, Li F, Yang X, Song J, Yu DJ. Zhang Y, et al. Among authors: yang x. IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):3205-3214. doi: 10.1109/TCBB.2023.3283985. Epub 2023 Oct 9. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 37289599

8

Rough set approach to incomplete multiscale information system.

Yang X, Qi Y, Yu D, Yu H, Song X, Yang J. Yang X, et al. Among authors: yang j. ScientificWorldJournal. 2014;2014:538968. doi: 10.1155/2014/538968. Epub 2014 Aug 17. ScientificWorldJournal. 2014. PMID: 25276852 Free PMC article.

9

Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs.

Hu J, Li Y, Zhang M, Yang X, Shen HB, Yu DJ. Hu J, et al. Among authors: yang x. IEEE/ACM Trans Comput Biol Bioinform. 2017 Nov-Dec;14(6):1389-1398. doi: 10.1109/TCBB.2016.2616469. Epub 2016 Oct 11. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 27740495

10

Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression.

Yu DJ, Li Y, Hu J, Yang X, Yang JY, Shen HB. Yu DJ, et al. Among authors: yang jy, yang x. IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):611-21. doi: 10.1109/TCBB.2014.2359451. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357272

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