Irizarry RA - Search Results

1

Identifying spatially variable genes by projecting to morphologically relevant curves.

Nicol PB, Ma R, Xu RJ, Moffitt JR, Irizarry RA. Nicol PB, et al. Among authors: irizarry ra. bioRxiv [Preprint]. 2024 Nov 21:2024.11.21.624653. doi: 10.1101/2024.11.21.624653. bioRxiv. 2024. PMID: 39605709 Free PMC article. Preprint.

2

Baseline immune state and T-cell clonal kinetics are associated with durable response to CAR-T therapy in large B-cell lymphoma.

Maurer K, Grabski IN, Houot R, Gohil SH, Miura S, Redd R, Lyu H, Lu W, Arihara Y, Budka J, McDonough M, Ansuinelli M, Reynolds C, Jacene H, Li S, Livak KJ, Ritz J, Miles B, Mattie M, Neuberg DS, Irizarry RA, Armand P, Wu CJ, Jacobson C. Maurer K, et al. Among authors: irizarry ra. Blood. 2024 Dec 12;144(24):2490-2502. doi: 10.1182/blood.2024024381. Blood. 2024. PMID: 39241199

3

Detection of allele-specific expression in spatial transcriptomics with spASE.

Zou LS, Cable DM, Barrera-Lopez IA, Zhao T, Murray E, Aryee MJ, Chen F, Irizarry RA. Zou LS, et al. Among authors: irizarry ra. Genome Biol. 2024 Jul 8;25(1):180. doi: 10.1186/s13059-024-03317-4. Genome Biol. 2024. PMID: 38978101 Free PMC article.

4

DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues.

Kock KH, Kimes PK, Gisselbrecht SS, Inukai S, Phanor SK, Anderson JT, Ramakrishnan G, Lipper CH, Song D, Kurland JV, Rogers JM, Jeong R, Blacklow SC, Irizarry RA, Bulyk ML. Kock KH, et al. Among authors: irizarry ra. Nat Commun. 2024 Apr 10;15(1):3110. doi: 10.1038/s41467-024-47396-0. Nat Commun. 2024. PMID: 38600112 Free PMC article.

5

Effects of KRAS Genetic Interactions on Outcomes in Cancers of the Lung, Pancreas, and Colorectum.

Grabski IN, Heymach JV, Kehl KL, Kopetz S, Lau KS, Riely GJ, Schrag D, Yaeger R, Irizarry RA, Haigis KM. Grabski IN, et al. Among authors: irizarry ra. Cancer Epidemiol Biomarkers Prev. 2024 Jan 9;33(1):158-169. doi: 10.1158/1055-9965.EPI-23-0262. Cancer Epidemiol Biomarkers Prev. 2024. PMID: 37943166 Free PMC article.

6

Significance analysis for clustering with single-cell RNA-sequencing data.

Grabski IN, Street K, Irizarry RA. Grabski IN, et al. Among authors: irizarry ra. Nat Methods. 2023 Aug;20(8):1196-1202. doi: 10.1038/s41592-023-01933-9. Epub 2023 Jul 10. Nat Methods. 2023. PMID: 37429993 Free PMC article.

7

All-cause excess mortality across 90 municipalities in Gujarat, India, during the COVID-19 pandemic (March 2020-April 2021).

Acosta RJ, Patnaik B, Buckee C, Kiang MV, Irizarry RA, Balsari S, Mahmud A. Acosta RJ, et al. Among authors: irizarry ra. PLOS Glob Public Health. 2022 Aug 16;2(8):e0000824. doi: 10.1371/journal.pgph.0000824. eCollection 2022. PLOS Glob Public Health. 2022. PMID: 36962751 Free PMC article.

8

Cell type-specific inference of differential expression in spatial transcriptomics.

Cable DM, Murray E, Shanmugam V, Zhang S, Zou LS, Diao M, Chen H, Macosko EZ, Irizarry RA, Chen F. Cable DM, et al. Among authors: irizarry ra. Nat Methods. 2022 Sep;19(9):1076-1087. doi: 10.1038/s41592-022-01575-3. Epub 2022 Sep 1. Nat Methods. 2022. PMID: 36050488 Free PMC article.

9

Differential richness inference for 16S rRNA marker gene surveys.

Kumar MS, Slud EV, Hehnly C, Zhang L, Broach J, Irizarry RA, Schiff SJ, Paulson JN. Kumar MS, et al. Among authors: irizarry ra. Genome Biol. 2022 Aug 1;23(1):166. doi: 10.1186/s13059-022-02722-x. Genome Biol. 2022. PMID: 35915508 Free PMC article.

10

A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data.

Grabski IN, Irizarry RA. Grabski IN, et al. Among authors: irizarry ra. Biostatistics. 2022 Oct 14;23(4):1150-1164. doi: 10.1093/biostatistics/kxac021. Biostatistics. 2022. PMID: 35770795 Free PMC article.

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