Liu F - Search Results

1

A workflow for the hybrid modelling and simulation of multi-timescale biological systems.

Herajy M, Liu F, Heiner M. Herajy M, et al. Among authors: liu f. Biosystems. 2025 Jan;247:105365. doi: 10.1016/j.biosystems.2024.105365. Epub 2024 Nov 22. Biosystems. 2025. PMID: 39580069

2

Snoopy's hybrid simulator: a tool to construct and simulate hybrid biological models.

Herajy M, Liu F, Rohr C, Heiner M. Herajy M, et al. Among authors: liu f. BMC Syst Biol. 2017 Jul 28;11(1):71. doi: 10.1186/s12918-017-0449-6. BMC Syst Biol. 2017. PMID: 28754122 Free PMC article.

3

Coloured Hybrid Petri Nets: An adaptable modelling approach for multi-scale biological networks.

Herajy M, Liu F, Rohr C, Heiner M. Herajy M, et al. Among authors: liu f. Comput Biol Chem. 2018 Oct;76:87-100. doi: 10.1016/j.compbiolchem.2018.05.023. Epub 2018 May 28. Comput Biol Chem. 2018. PMID: 29982167

4

A Petri nets-based framework for whole-cell modeling.

Liu F, Assaf G, Chen M, Heiner M. Liu F, et al. Biosystems. 2021 Dec;210:104533. doi: 10.1016/j.biosystems.2021.104533. Epub 2021 Sep 17. Biosystems. 2021. PMID: 34543693

5

Coloured fuzzy Petri nets for modelling and analysing membrane systems.

Assaf G, Heiner M, Liu F. Assaf G, et al. Among authors: liu f. Biosystems. 2022 Feb;212:104592. doi: 10.1016/j.biosystems.2021.104592. Epub 2022 Jan 4. Biosystems. 2022. PMID: 34995696 Free article.

6

Multiscale modelling of coupled Ca2+ channels using coloured stochastic Petri nets.

Liu F, Heiner M. Liu F, et al. IET Syst Biol. 2013 Aug 1;7(4):106-13. doi: 10.1049/iet-syb.2012.0017. IET Syst Biol. 2013. PMID: 23919953 Free PMC article.

7

Modelling and simulating reaction-diffusion systems using coloured Petri nets.

Liu F, Blätke MA, Heiner M, Yang M. Liu F, et al. Comput Biol Med. 2014 Oct;53:297-308. doi: 10.1016/j.compbiomed.2014.07.004. Epub 2014 Jul 15. Comput Biol Med. 2014. PMID: 25150626

8

Fuzzy Stochastic Petri Nets for Modeling Biological Systems with Uncertain Kinetic Parameters.

Liu F, Heiner M, Yang M. Liu F, et al. PLoS One. 2016 Feb 24;11(2):e0149674. doi: 10.1371/journal.pone.0149674. eCollection 2016. PLoS One. 2016. PMID: 26910830 Free PMC article.

9

Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems.

Liu F, Heiner M, Gilbert D. Liu F, et al. Brief Bioinform. 2019 May 21;20(3):877-886. doi: 10.1093/bib/bbx150. Brief Bioinform. 2019. PMID: 29112705 Free PMC article. Review.

10

Modeling biological systems with uncertain kinetic data using fuzzy continuous Petri nets.

Liu F, Chen S, Heiner M, Song H. Liu F, et al. BMC Syst Biol. 2018 Apr 24;12(Suppl 4):42. doi: 10.1186/s12918-018-0568-8. BMC Syst Biol. 2018. PMID: 29745860 Free PMC article.

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