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Page 1
Reproducible processing of TCGA regulatory networks.
Fanfani V, Shutta KH, Mandros P, Fischer J, Saha E, Micheletti S, Chen C, Guebila MB, Lopes-Ramos CM, Quackenbush J. Fanfani V, et al. Among authors: quackenbush j. bioRxiv [Preprint]. 2024 Nov 7:2024.11.05.622163. doi: 10.1101/2024.11.05.622163. bioRxiv. 2024. PMID: 39574772 Free PMC article. Preprint.
Selective loss of Y chromosomes in lung adenocarcinoma modulates the tumor immune environment through cancer/testis antigens.
Fischer J, Shutta KH, Chen C, Fanfani V, Saha E, Mandros P, Ben Guebila M, Xiu J, Nieva J, Liu S, Uprety D, Spetzler D, Lopes-Ramos CM, DeMeo D, Quackenbush J. Fischer J, et al. Among authors: quackenbush j. bioRxiv [Preprint]. 2024 Sep 22:2024.09.19.613876. doi: 10.1101/2024.09.19.613876. bioRxiv. 2024. PMID: 39345481 Free PMC article. Preprint.
Spatial Cellular Networks from omics data with SpaCeNet.
Schrod S, Lück N, Lohmayer R, Solbrig S, Völkl D, Wipfler T, Shutta KH, Ben Guebila M, Schäfer A, Beißbarth T, Zacharias HU, Oefner PJ, Quackenbush J, Altenbuchinger M. Schrod S, et al. Among authors: quackenbush j. Genome Res. 2024 Oct 11;34(9):1371-1383. doi: 10.1101/gr.279125.124. Genome Res. 2024. PMID: 39231609
Bayesian inference of sample-specific coexpression networks.
Saha E, Fanfani V, Mandros P, Ben Guebila M, Fischer J, Shutta KH, DeMeo DL, Lopes-Ramos CM, Quackenbush J. Saha E, et al. Among authors: quackenbush j. Genome Res. 2024 Oct 11;34(9):1397-1410. doi: 10.1101/gr.279117.124. Genome Res. 2024. PMID: 39134413 Free PMC article.
Gene regulatory networks reveal sex difference in lung adenocarcinoma.
Saha E, Ben Guebila M, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM. Saha E, et al. Among authors: quackenbush j. Biol Sex Differ. 2024 Aug 6;15(1):62. doi: 10.1186/s13293-024-00634-y. Biol Sex Differ. 2024. PMID: 39107837 Free PMC article.
Sex-biased Regulation of Extracellular Matrix Genes in COPD.
Lopes-Ramos CM, Shutta KH, Ryu MH, Huang Y, Saha E, Ziniti J, Chase R, Hobbs BD, Yun JH, Castaldi P, Hersh CP, Glass K, Silverman EK, Quackenbush J, DeMeo DL. Lopes-Ramos CM, et al. Among authors: quackenbush j. Am J Respir Cell Mol Biol. 2024 Aug 5;72(1):72-81. doi: 10.1165/rcmb.2024-0226OC. Online ahead of print. Am J Respir Cell Mol Biol. 2024. PMID: 39102858
366 results