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Page 1
Structural variation in the pangenome of wild and domesticated barley.
Jayakodi M, Lu Q, Pidon H, Rabanus-Wallace MT, Bayer M, Lux T, Guo Y, Jaegle B, Badea A, Bekele W, Brar GS, Braune K, Bunk B, Chalmers KJ, Chapman B, Jørgensen ME, Feng JW, Feser M, Fiebig A, Gundlach H, Guo W, Haberer G, Hansson M, Himmelbach A, Hoffie I, Hoffie RE, Hu H, Isobe S, König P, Kale SM, Kamal N, Keeble-Gagnère G, Keller B, Knauft M, Koppolu R, Krattinger SG, Kumlehn J, Langridge P, Li C, Marone MP, Maurer A, Mayer KFX, Melzer M, Muehlbauer GJ, Murozuka E, Padmarasu S, Perovic D, Pillen K, Pin PA, Pozniak CJ, Ramsay L, Pedas PR, Rutten T, Sakuma S, Sato K, Schüler D, Schmutzer T, Scholz U, Schreiber M, Shirasawa K, Simpson C, Skadhauge B, Spannagl M, Steffenson BJ, Thomsen HC, Tibbits JF, Nielsen MTS, Trautewig C, Vequaud D, Voss C, Wang P, Waugh R, Westcott S, Rasmussen MW, Zhang R, Zhang XQ, Wicker T, Dockter C, Mascher M, Stein N. Jayakodi M, et al. Among authors: pozniak cj. Nature. 2024 Dec;636(8043):654-662. doi: 10.1038/s41586-024-08187-1. Epub 2024 Nov 13. Nature. 2024. PMID: 39537924 Free PMC article.
The barley pan-genome reveals the hidden legacy of mutation breeding.
Jayakodi M, Padmarasu S, Haberer G, Bonthala VS, Gundlach H, Monat C, Lux T, Kamal N, Lang D, Himmelbach A, Ens J, Zhang XQ, Angessa TT, Zhou G, Tan C, Hill C, Wang P, Schreiber M, Boston LB, Plott C, Jenkins J, Guo Y, Fiebig A, Budak H, Xu D, Zhang J, Wang C, Grimwood J, Schmutz J, Guo G, Zhang G, Mochida K, Hirayama T, Sato K, Chalmers KJ, Langridge P, Waugh R, Pozniak CJ, Scholz U, Mayer KFX, Spannagl M, Li C, Mascher M, Stein N. Jayakodi M, et al. Among authors: pozniak cj. Nature. 2020 Dec;588(7837):284-289. doi: 10.1038/s41586-020-2947-8. Epub 2020 Nov 25. Nature. 2020. PMID: 33239781 Free PMC article.
Multiple wheat genomes reveal global variation in modern breeding.
Walkowiak S, Gao L, Monat C, Haberer G, Kassa MT, Brinton J, Ramirez-Gonzalez RH, Kolodziej MC, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri JN, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo DH, Ens J, Wiebe K, N'Diaye A, Fritz AK, Gutwin C, Fiebig A, Fosker C, Fu BX, Accinelli GG, Gardner KA, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh CS, Deek J, Costamagna AC, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, McKenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnère G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl PJ, Sharpe AG, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger SG, Handa H, Shimizu KK, Distelfeld A, Chalmers K, Keller B, Mayer KFX, Poland J, Stein N, McCartney CA, Spannagl M, Wicker T, Pozniak CJ. Walkowiak S, et al. Among authors: pozniak cj. Nature. 2020 Dec;588(7837):277-283. doi: 10.1038/s41586-020-2961-x. Epub 2020 Nov 25. Nature. 2020. PMID: 33239791 Free PMC article.
Long-read sequence assembly: a technical evaluation in barley.
Mascher M, Wicker T, Jenkins J, Plott C, Lux T, Koh CS, Ens J, Gundlach H, Boston LB, Tulpová Z, Holden S, Hernández-Pinzón I, Scholz U, Mayer KFX, Spannagl M, Pozniak CJ, Sharpe AG, Šimková H, Moscou MJ, Grimwood J, Schmutz J, Stein N. Mascher M, et al. Among authors: pozniak cj. Plant Cell. 2021 Jul 19;33(6):1888-1906. doi: 10.1093/plcell/koab077. Plant Cell. 2021. PMID: 33710295 Free PMC article.
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential.
Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer KFX, Guo L, Poland J, Pozniak CJ, Walkowiak S, Melonek J, Praz CR, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler DB, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov AV, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma XF, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman AH, Siekmann D, Stojałowski S, Tiwari VK, Spannagl M, Stein N. Rabanus-Wallace MT, et al. Among authors: pozniak cj. Nat Genet. 2021 Apr;53(4):564-573. doi: 10.1038/s41588-021-00807-0. Epub 2021 Mar 18. Nat Genet. 2021. PMID: 33737754 Free PMC article.
Origin and evolution of the bread wheat D genome.
Cavalet-Giorsa E, González-Muñoz A, Athiyannan N, Holden S, Salhi A, Gardener C, Quiroz-Chávez J, Rustamova SM, Elkot AF, Patpour M, Rasheed A, Mao L, Lagudah ES, Periyannan SK, Sharon A, Himmelbach A, Reif JC, Knauft M, Mascher M, Stein N, Chayut N, Ghosh S, Perovic D, Putra A, Perera AB, Hu CY, Yu G, Ahmed HI, Laquai KD, Rivera LF, Chen R, Wang Y, Gao X, Liu S, Raupp WJ, Olson EL, Lee JY, Chhuneja P, Kaur S, Zhang P, Park RF, Ding Y, Liu DC, Li W, Nasyrova FY, Dvorak J, Abbasi M, Li M, Kumar N, Meyer WB, Boshoff WHP, Steffenson BJ, Matny O, Sharma PK, Tiwari VK, Grewal S, Pozniak CJ, Chawla HS, Ens J, Dunning LT, Kolmer JA, Lazo GR, Xu SS, Gu YQ, Xu X, Uauy C, Abrouk M, Bougouffa S, Brar GS, Wulff BBH, Krattinger SG. Cavalet-Giorsa E, et al. Among authors: pozniak cj. Nature. 2024 Sep;633(8031):848-855. doi: 10.1038/s41586-024-07808-z. Epub 2024 Aug 14. Nature. 2024. PMID: 39143210 Free PMC article.
Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62.
Yu G, Matny O, Champouret N, Steuernagel B, Moscou MJ, Hernández-Pinzón I, Green P, Hayta S, Smedley M, Harwood W, Kangara N, Yue Y, Gardener C, Banfield MJ, Olivera PD, Welchin C, Simmons J, Millet E, Minz-Dub A, Ronen M, Avni R, Sharon A, Patpour M, Justesen AF, Jayakodi M, Himmelbach A, Stein N, Wu S, Poland J, Ens J, Pozniak C, Karafiátová M, Molnár I, Doležel J, Ward ER, Reuber TL, Jones JDG, Mascher M, Steffenson BJ, Wulff BBH. Yu G, et al. Nat Commun. 2022 Mar 25;13(1):1607. doi: 10.1038/s41467-022-29132-8. Nat Commun. 2022. PMID: 35338132 Free PMC article.
Durum wheat genome highlights past domestication signatures and future improvement targets.
Maccaferri M, Harris NS, Twardziok SO, Pasam RK, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade VM, Milner SG, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, Lauria M, Lazzari B, Stella A, Manconi A, Gnocchi M, Moscatelli M, Avni R, Deek J, Biyiklioglu S, Frascaroli E, Corneti S, Salvi S, Sonnante G, Desiderio F, Marè C, Crosatti C, Mica E, Özkan H, Kilian B, De Vita P, Marone D, Joukhadar R, Mazzucotelli E, Nigro D, Gadaleta A, Chao S, Faris JD, Melo ATO, Pumphrey M, Pecchioni N, Milanesi L, Wiebe K, Ens J, MacLachlan RP, Clarke JM, Sharpe AG, Koh CS, Liang KYH, Taylor GJ, Knox R, Budak H, Mastrangelo AM, Xu SS, Stein N, Hale I, Distelfeld A, Hayden MJ, Tuberosa R, Walkowiak S, Mayer KFX, Ceriotti A, Pozniak CJ, Cattivelli L. Maccaferri M, et al. Among authors: pozniak cj. Nat Genet. 2019 May;51(5):885-895. doi: 10.1038/s41588-019-0381-3. Epub 2019 Apr 8. Nat Genet. 2019. PMID: 30962619 Free article.
Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement.
Avni R, Lux T, Minz-Dub A, Millet E, Sela H, Distelfeld A, Deek J, Yu G, Steuernagel B, Pozniak C, Ens J, Gundlach H, Mayer KFX, Himmelbach A, Stein N, Mascher M, Spannagl M, Wulff BBH, Sharon A. Avni R, et al. Plant J. 2022 Apr;110(1):179-192. doi: 10.1111/tpj.15664. Epub 2022 Feb 12. Plant J. 2022. PMID: 34997796 Free PMC article.
95 results