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Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update.
Cabas-Mora G, Daza A, Soto-García N, Garrido V, Alvarez D, Navarrete M, Sarmiento-Varón L, Sepúlveda Yañez JH, Davari MD, Cadet F, Olivera-Nappa Á, Uribe-Paredes R, Medina-Ortiz D. Cabas-Mora G, et al. Among authors: navarrete m. Database (Oxford). 2024 Nov 8;2024:baae113. doi: 10.1093/database/baae113. Database (Oxford). 2024. PMID: 39514414 Free PMC article.
Peptide-based drug discovery through artificial intelligence: towards an autonomous design of therapeutic peptides.
Goles M, Daza A, Cabas-Mora G, Sarmiento-Varón L, Sepúlveda-Yañez J, Anvari-Kazemabad H, Davari MD, Uribe-Paredes R, Olivera-Nappa Á, Navarrete MA, Medina-Ortiz D. Goles M, et al. Among authors: navarrete ma. Brief Bioinform. 2024 May 23;25(4):bbae275. doi: 10.1093/bib/bbae275. Brief Bioinform. 2024. PMID: 38856172 Free PMC article. Review.
Integration of Mutational Signature Analysis with 3D Chromatin Data Unveils Differential AID-Related Mutagenesis in Indolent Lymphomas.
Sepulveda-Yanez JH, Alvarez-Saravia D, Fernandez-Goycoolea J, Aldridge J, van Bergen CAM, Posthuma W, Uribe-Paredes R, Veelken H, Navarrete MA. Sepulveda-Yanez JH, et al. Among authors: navarrete ma. Int J Mol Sci. 2021 Dec 1;22(23):13015. doi: 10.3390/ijms222313015. Int J Mol Sci. 2021. PMID: 34884820 Free PMC article.
Mutation in a SARS-CoV-2 Haplotype from Sub-Antarctic Chile Reveals New Insights into the Spike's Dynamics.
González-Puelma J, Aldridge J, Montes de Oca M, Pinto M, Uribe-Paredes R, Fernández-Goycoolea J, Alvarez-Saravia D, Álvarez H, Encina G, Weitzel T, Muñoz R, Olivera-Nappa Á, Pantano S, Navarrete MA. González-Puelma J, et al. Among authors: navarrete ma. Viruses. 2021 May 11;13(5):883. doi: 10.3390/v13050883. Viruses. 2021. PMID: 34064904 Free PMC article.
Acquisition of a glycosylated B-cell receptor drives follicular lymphoma toward a dark zone phenotype.
van Bergen CAM, Kloet SL, Quinten E, Sepúlveda Yáñez JH, Menafra R, Griffioen M, Jansen PM, Koning MT, Knijnenburg J, Navarrete MA, Kiełbasa SM, Veelken H. van Bergen CAM, et al. Among authors: navarrete ma. Blood Adv. 2023 Oct 10;7(19):5812-5816. doi: 10.1182/bloodadvances.2023010725. Blood Adv. 2023. PMID: 37493974 Free PMC article. No abstract available.
Tandem Substitutions in Somatic Hypermutation.
Sepúlveda-Yáñez JH, Alvarez Saravia D, Pilzecker B, van Schouwenburg PA, van den Burg M, Veelken H, Navarrete MA, Jacobs H, Koning MT. Sepúlveda-Yáñez JH, et al. Among authors: navarrete ma. Front Immunol. 2022 Jan 7;12:807015. doi: 10.3389/fimmu.2021.807015. eCollection 2021. Front Immunol. 2022. PMID: 35069591 Free PMC article.
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants.
Oksza-Orzechowski K, Quinten E, Shafighi S, Kiełbasa SM, van Kessel HW, de Groen RAL, Vermaat JSP, Sepúlveda Yáñez JH, Navarrete MA, Veelken H, van Bergen CAM, Szczurek E. Oksza-Orzechowski K, et al. Among authors: navarrete ma. Genome Biol. 2024 Nov 5;25(1):286. doi: 10.1186/s13059-024-03417-1. Genome Biol. 2024. PMID: 39501370 Free PMC article.
Autonomous B-cell receptor signaling and genetic aberrations in chronic lymphocytic leukemia-phenotype monoclonal B lymphocytosis in siblings of patients with chronic lymphocytic leukemia.
Quinten E, Sepúlveda-Yáñez JH, Koning MT, Eken JA, Pfeifer D, Nteleah V, De Groen RAL, Saravia DA, Knijnenburg J, Stuivenberg-Bleijswijk HE, Pantic M, Agathangelidis A, Keppler-Hafkemeyer A, Van Bergen CAM, Uribe-Paredes R, Stamatopoulos K, Vermaat JSP, Zirlik K, Navarrete MA, Jumaa H, Veelken H. Quinten E, et al. Among authors: navarrete ma. Haematologica. 2024 Mar 1;109(3):824-834. doi: 10.3324/haematol.2022.282542. Haematologica. 2024. PMID: 37439337 Free PMC article.
Antigen-independent, autonomous B cell receptor signaling drives activated B cell DLBCL.
Eken JA, Koning MT, Kupcova K, Sepúlveda Yáñez JH, de Groen RAL, Quinten E, Janssen J, van Bergen CAM, Vermaat JSP, Cleven A, Navarrete MA, Ylstra B, de Jong D, Havranek O, Jumaa H, Veelken H. Eken JA, et al. Among authors: navarrete ma. J Exp Med. 2024 May 6;221(5):e20230941. doi: 10.1084/jem.20230941. Epub 2024 Mar 21. J Exp Med. 2024. PMID: 38512136 Free PMC article.
351 results