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Page 1
T cell epitope mapping reveals immunodominance of evolutionarily conserved regions within SARS-CoV-2 proteome.
Bozkus CC, Brown M, Velazquez L, Thomas M, Wilson EA, O'Donnell T, Ruchnewitz D, Geertz D, Bykov Y, Kodysh J, Oguntuyo KY, Roudko V, Hoyos D, Srivastava KD, Kleiner G, Alshammary H, Karekar N, McClain C, Gopal R, Nie K, Del Valle D, Delbeau-Zagelbaum D, Rodriguez D, Setal J; Mount Sinai COVID-19 Biobank Team; Carroll E, Wiesendanger M, Gulko PS, Charney A, Merad M, Kim-Schulze S, Lee B, Wajnberg A, Simon V, Greenbaum BD, Chowell D, Vabret N, Luksza M, Bhardwaj N. Bozkus CC, et al. Among authors: ruchnewitz d. bioRxiv [Preprint]. 2024 Oct 24:2024.10.23.619918. doi: 10.1101/2024.10.23.619918. bioRxiv. 2024. PMID: 39484455 Free PMC article. Preprint.
Concepts and methods for predicting viral evolution.
Meijers M, Ruchnewitz D, Eberhardt J, Karmakar M, Łuksza M, Lässig M. Meijers M, et al. Among authors: ruchnewitz d. bioRxiv [Preprint]. 2024 Nov 30:2024.03.19.585703. doi: 10.1101/2024.03.19.585703. bioRxiv. 2024. PMID: 38746108 Free PMC article. Preprint.
Concepts and methods for predicting viral evolution.
Meijers M, Ruchnewitz D, Eberhardt J, Karmakar M, Luksza M, Lässig M. Meijers M, et al. Among authors: ruchnewitz d. ArXiv [Preprint]. 2024 Nov 27:arXiv:2403.12684v3. ArXiv. 2024. PMID: 38745695 Free PMC article. Preprint.
Population immunity predicts evolutionary trajectories of SARS-CoV-2.
Meijers M, Ruchnewitz D, Eberhardt J, Łuksza M, Lässig M. Meijers M, et al. Among authors: ruchnewitz d. Cell. 2023 Nov 9;186(23):5151-5164.e13. doi: 10.1016/j.cell.2023.09.022. Epub 2023 Oct 23. Cell. 2023. PMID: 37875109 Free PMC article.
Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Roder AE, Johnson KEE, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Chung M, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lässig M, Luksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. Among authors: ruchnewitz d. mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. Epub 2023 Jun 30. mBio. 2023. PMID: 37389439 Free PMC article.
Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data.
Roder AE, Johnson K, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lassig M, Åuksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. Among authors: ruchnewitz d. bioRxiv [Preprint]. 2022 Aug 16:2021.05.05.442873. doi: 10.1101/2021.05.05.442873. bioRxiv. 2022. Update in: mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23 PMID: 36656775 Free PMC article. Updated. Preprint.
Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers.
Vanshylla K, Fan C, Wunsch M, Poopalasingam N, Meijers M, Kreer C, Kleipass F, Ruchnewitz D, Ercanoglu MS, Gruell H, Münn F, Pohl K, Janicki H, Nolden T, Bartl S, Stein SC, Augustin M, Dewald F, Gieselmann L, Schommers P, Schulz TF, Sander LE, Koch M, Łuksza M, Lässig M, Bjorkman PJ, Klein F. Vanshylla K, et al. Among authors: ruchnewitz d. Cell Host Microbe. 2022 Jan 12;30(1):69-82.e10. doi: 10.1016/j.chom.2021.12.010. Epub 2021 Dec 18. Cell Host Microbe. 2022. PMID: 34973165 Free PMC article.
Clinical and Genomic Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2) Infections in mRNA Vaccinated Health Care Personnel in New York City.
Robilotti EV, Whiting K, Lucca A, Poon C, Guest R, McMillen T, Jani K, Solovyov A, Kelson S, Browne K, Freeswick S, Hohl TM, Korenstein D, Ruchnewitz D, Lässig M, Łuksza M, Greenbaum B, Seshan VE, Esther Babady N, Kamboj M. Robilotti EV, et al. Among authors: ruchnewitz d. Clin Infect Dis. 2022 Aug 24;75(1):e774-e782. doi: 10.1093/cid/ciab886. Clin Infect Dis. 2022. PMID: 34644393 Free PMC article.