Gumbart JC - Search Results

1

Structural characterization of the POTRA domains from A. baumannii reveals new conformations in BamA.

Cottom CO, Stephenson R, Ricci D, Yang L, Gumbart JC, Noinaj N. Cottom CO, et al. Among authors: gumbart jc. Structure. 2024 Nov 7;32(11):2038-2048.e3. doi: 10.1016/j.str.2024.08.013. Epub 2024 Sep 17. Structure. 2024. PMID: 39293443

2

Molecular Dynamics Reveals Altered Interactions between Belzutifan and HIF-2 with Natural Variant G323E or Proximal Phosphorylation at T324.

Natarajan V, Satalkar V, Gumbart JC, Torres M. Natarajan V, et al. Among authors: gumbart jc. ACS Omega. 2024 Aug 26;9(36):37843-37855. doi: 10.1021/acsomega.4c03777. eCollection 2024 Sep 10. ACS Omega. 2024. PMID: 39281922 Free PMC article.

3

Allosteric coupling of substrate binding and proton translocation in MmpL3 transporter from Mycobacterium tuberculosis.

Babii S, Li W, Yang L, Grzegorzewicz AE, Jackson M, Gumbart JC, Zgurskaya HI. Babii S, et al. Among authors: gumbart jc. mBio. 2024 Oct 16;15(10):e0218324. doi: 10.1128/mbio.02183-24. Epub 2024 Aug 30. mBio. 2024. PMID: 39212407 Free PMC article.

4

Broadening access to small-molecule parameterization with the force field toolkit.

Zeng Y, Pavlova A, Nelson PM, Glick ZL, Yang L, Pang YT, Spivak M, Licari G, Tajkhorshid E, Sherrill CD, Gumbart JC. Zeng Y, et al. Among authors: gumbart jc. J Chem Phys. 2024 Jun 28;160(24):242501. doi: 10.1063/5.0196848. J Chem Phys. 2024. PMID: 38916266

5

Mg²⁺-dependent mechanism of environmental versatility in a multidrug efflux pump.

Lewis BR, Uddin MR, Kuo KM, Shah LMN, Harris NJ, Booth PJ, Hammerschmid D, Gumbart JC, Zgurskaya HI, Reading E. Lewis BR, et al. Among authors: gumbart jc. bioRxiv [Preprint]. 2024 Jun 10:2024.06.10.597921. doi: 10.1101/2024.06.10.597921. bioRxiv. 2024. PMID: 38915626 Free PMC article. Preprint.

6

SANS reveals lipid-dependent oligomerization of an intramembrane aspartyl protease from H. volcanii.

Thomas GM, Wu Y, Leite W, Pingali SV, Weiss KL, Grant AJ, Diggs MW, Schmidt-Krey I, Gutishvili G, Gumbart JC, Urban VS, Lieberman RL. Thomas GM, et al. Among authors: gumbart jc. Biophys J. 2024 Jul 2;123(13):1846-1856. doi: 10.1016/j.bpj.2024.05.029. Epub 2024 Jun 1. Biophys J. 2024. PMID: 38824390

7

Thicket and Mesh: How the Outer Membrane Can Resist Tension Imposed by the Cell Wall.

Ryoo D, Hwang H, Gumbart JC. Ryoo D, et al. Among authors: gumbart jc. J Phys Chem B. 2024 Jun 6;128(22):5371-5377. doi: 10.1021/acs.jpcb.3c08510. Epub 2024 May 24. J Phys Chem B. 2024. PMID: 38787347 Free PMC article.

8

Enhanced Surface Accessibility of SARS-CoV-2 Omicron Spike Protein Due to an Altered Glycosylation Profile.

Wang D, Zhang Z, Baudys J, Haynes C, Osman SH, Zhou B, Barr JR, Gumbart JC. Wang D, et al. Among authors: gumbart jc. ACS Infect Dis. 2024 Jun 14;10(6):2032-2046. doi: 10.1021/acsinfecdis.4c00015. Epub 2024 May 10. ACS Infect Dis. 2024. PMID: 38728322 Free PMC article.

9

Seeing is believing: Illuminating the Gram-negative outer membrane with molecular dynamics simulations.

Gutishvili G, Yang L, Gumbart JC. Gutishvili G, et al. Among authors: gumbart jc. Curr Opin Struct Biol. 2024 Aug;87:102828. doi: 10.1016/j.sbi.2024.102828. Epub 2024 May 8. Curr Opin Struct Biol. 2024. PMID: 38723580 Review.

10

Biophysics-Guided Lead Discovery of HBV Capsid Assembly Modifiers.

Fan Z, Pavlova A, Jenkins MC, Bassit L, Salman M, Lynch DL, Patel D, Korablyov M, Finn MG, Schinazi RF, Gumbart JC. Fan Z, et al. Among authors: gumbart jc. ACS Infect Dis. 2024 Apr 12;10(4):1162-1173. doi: 10.1021/acsinfecdis.3c00479. Epub 2024 Apr 2. ACS Infect Dis. 2024. PMID: 38564659 Free PMC article.

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