Mäklin T - Search Results

1

Geographical variation in the incidence of colorectal cancer and urinary tract cancer is associated with population exposure to colibactin-producing Escherichia coli.

Mäklin T, Taira A, Arredondo-Alonso S, Shao Y, Stratton MR, Lawley TD, Aaltonen LA, Corander J. Mäklin T, et al. Lancet Microbe. 2024 Nov 16:101015. doi: 10.1016/j.lanmic.2024.101015. Online ahead of print. Lancet Microbe. 2024. PMID: 39644909 Free article. Review.

2

Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis.

Derelle R, von Wachsmann J, Mäklin T, Hellewell J, Russell T, Lalvani A, Chindelevitch L, Croucher NJ, Harris SR, Lees JA. Derelle R, et al. Among authors: maklin t. Genome Res. 2024 Oct 29;34(10):1661-1673. doi: 10.1101/gr.279449.124. Genome Res. 2024. PMID: 39406504 Free PMC article.

3

Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.

Thorpe HA, Pesonen M, Corbella M, Pesonen H, Gaiarsa S, Boinett CJ, Tonkin-Hill G, Mäklin T, Pöntinen AK, MacAlasdair N, Gladstone RA, Arredondo-Alonso S, Kallonen T, Jamrozy D, Lo SW, Chaguza C, Blackwell GA, Honkela A, Schürch AC, Willems RJL, Merla C, Petazzoni G, Feil EJ, Cambieri P, Thomson NR, Bentley SD, Sassera D, Corander J. Thorpe HA, et al. Among authors: maklin t. Lancet Microbe. 2024 Oct;5(10):100890. doi: 10.1016/S2666-5247(24)00113-7. Epub 2024 Aug 20. Lancet Microbe. 2024. PMID: 39178869 Free article.

4

Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan.

Khawaja T, Mäklin T, Kallonen T, Gladstone RA, Pöntinen AK, Mero S, Thorpe HA, Samuelsen Ø, Parkhill J, Izhar M, Akhtar MW, Corander J, Kantele A. Khawaja T, et al. Among authors: maklin t. Nat Commun. 2024 Jun 18;15(1):5196. doi: 10.1038/s41467-024-49591-5. Nat Commun. 2024. PMID: 38890378 Free PMC article.

5

Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing.

Pol S, Kallonen T, Mäklin T, Sar P, Hopkins J, Soeng S, Miliya T, Ling CL, Bentley SD, Corander J, Turner P. Pol S, et al. Among authors: maklin t. mBio. 2024 Jun 12;15(6):e0078424. doi: 10.1128/mbio.00784-24. Epub 2024 Apr 29. mBio. 2024. PMID: 38682956 Free PMC article.

6

A Novel Prophage-like Insertion Element within yabG Triggers Early Entry into Sporulation in Clostridium botulinum.

Douillard FP, Portinha IM, Derman Y, Woudstra C, Mäklin T, Dorner MB, Korkeala H, Henriques AO, Lindström M. Douillard FP, et al. Among authors: maklin t. Viruses. 2023 Dec 14;15(12):2431. doi: 10.3390/v15122431. Viruses. 2023. PMID: 38140671 Free PMC article.

7

Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes.

Alanko JN, Vuohtoniemi J, Mäklin T, Puglisi SJ. Alanko JN, et al. Among authors: maklin t. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i260-i269. doi: 10.1093/bioinformatics/btad233. Bioinformatics. 2023. PMID: 37387143 Free PMC article.

8

Strong pathogen competition in neonatal gut colonisation.

Mäklin T, Thorpe HA, Pöntinen AK, Gladstone RA, Shao Y, Pesonen M, McNally A, Johnsen PJ, Samuelsen Ø, Lawley TD, Honkela A, Corander J. Mäklin T, et al. Nat Commun. 2022 Dec 1;13(1):7417. doi: 10.1038/s41467-022-35178-5. Nat Commun. 2022. PMID: 36456554 Free PMC article.

9

Genomic and Phenotypic Characterization of Clostridium botulinum Isolates from an Infant Botulism Case Suggests Adaptation Signatures to the Gut.

Douillard FP, Derman Y, Woudstra C, Selby K, Mäklin T, Dorner MB, Saxén H, Dorner BG, Korkeala H, Lindström M. Douillard FP, et al. Among authors: maklin t. mBio. 2022 Jun 28;13(3):e0238421. doi: 10.1128/mbio.02384-21. Epub 2022 May 2. mBio. 2022. PMID: 35499308 Free PMC article.

10

Bacterial genomic epidemiology with mixed samples.

Mäklin T, Kallonen T, Alanko J, Samuelsen Ø, Hegstad K, Mäkinen V, Corander J, Heinz E, Honkela A. Mäklin T, et al. Microb Genom. 2021 Nov;7(11):000691. doi: 10.1099/mgen.0.000691. Microb Genom. 2021. PMID: 34779765 Free PMC article.

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