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The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Gill EE, Jia B, Murall CL, Poujol R, Anwar MZ, John NS, Richardsson J, Hobb A, Olabode AS, Lepsa A, Duggan AT, Tyler AD, N'Guessan A, Kachru A, Chan B, Yoshida C, Yung CK, Bujold D, Andric D, Su E, Griffiths EJ, Van Domselaar G, Jolly GW, Ward HKE, Feher H, Baker J, Simpson JT, Uddin J, Ragoussis J, Eubank J, Fritz JH, Gálvez JH, Fang K, Cullion K, Rivera L, Xiang L, Croxen MA, Shiell M, Prystajecky N, Quirion PO, Bajari R, Rich S, Mubareka S, Moreira S, Cain S, Sutcliffe SG, Kraemer SA, Alturmessov Y, Joly Y, Cphln Consortium, CanCOGeN Consortium, VirusSeq Data Portal Academic And Health Network, Fiume M, Snutch TP, Bell C, Lopez-Correa C, Hussin JG, Joy JB, Colijn C, Gordon PMK, Hsiao WWL, Poon AFY, Knox NC, Courtot M, Stein L, Otto SP, Bourque G, Shapiro BJ, Brinkman FSL. Gill EE, et al. Among authors: su e. Microb Genom. 2024 Oct;10(10):001293. doi: 10.1099/mgen.0.001293. Microb Genom. 2024. PMID: 39401061 Free PMC article.
Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.
Haile S, Nikiforuk AM, Pandoh PK, Twa DDW, Smailus DE, Nguyen J, Pleasance S, Wong A, Zhao Y, Eisler D, Moksa M, Cao Q, Wong M, Su E, Krzywinski M, Nelson J, Mungall AJ, Tsang F, Prentice LM, Jassem A, Manges AR, Jones SJM, Coope RJ, Prystajecky N, Marra MA, Krajden M, Hirst M. Haile S, et al. Among authors: su e. J Virol Methods. 2022 Jan;299:114339. doi: 10.1016/j.jviromet.2021.114339. Epub 2021 Oct 20. J Virol Methods. 2022. PMID: 34687784 Free PMC article.
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data.
P E de Souza C, Andronescu M, Masud T, Kabeer F, Biele J, Laks E, Lai D, Ye P, Brimhall J, Wang B, Su E, Hui T, Cao Q, Wong M, Moksa M, Moore RA, Hirst M, Aparicio S, Shah SP. P E de Souza C, et al. Among authors: su e. PLoS Comput Biol. 2020 Sep 23;16(9):e1008270. doi: 10.1371/journal.pcbi.1008270. eCollection 2020 Sep. PLoS Comput Biol. 2020. PMID: 32966276 Free PMC article.
Synovial Sarcoma Chromatin Dynamics Reveal a Continuum in SS18:SSX Reprograming.
Hofvander J, Qiu A, Lee K, Bilenky M, Carles A, Cao Q, Moksa M, Steif J, Su E, Sotiriou A, Goytain A, Hill LA, Singer S, Andrulis IL, Wunder JS, Mertens F, Banito A, Jones KB, Underhill TM, Nielsen TO, Hirst M. Hofvander J, et al. Among authors: su e. bioRxiv [Preprint]. 2024 May 17:2024.05.14.594262. doi: 10.1101/2024.05.14.594262. bioRxiv. 2024. PMID: 38798672 Free PMC article. Preprint.
756 results